Hg_chrom8_TN10mRNA_15701
Organism: Heterodera glycines Gene Locus: chr8:5564087-5565327 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.326 | 1.196 | 0.907 | 0.512 | 0.9 | 0.679 | 1.535 | 1.072 | 1.482 | 0.665 | 1.032 | 2.315 | 0.759 | 1.253 | 1.003 | 0.719 | 0.93 | 1.35 | 1.419 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14833
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.889
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.339
|
0.437
|
0.018
|
0.271
|
0.607
|
0.223
|
0.359
|
0.063
|
0.178
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012013
|
1.000
|
1.000
|
Hsc_gene_6568.t1
|
Hsc_gene_6568.t1
|
— |
Q0IIJ0.1 N-alpha-acetyltransferase 50 [Bos taurus]
|
KAF7634864.1 N-acetyltransferase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004596|GO:0016747
|
GO:0008150_0.855|GO:0009987_0.790|GO:0003674_0.740|GO:0005575_0.707|GO:0110165_0.707|GO:0003824_0.632|GO:0071840_0.632|GO:0016043_0.630|GO:0005622_0.617|GO:0005737_0.600|GO:0008152_0.594|GO:0016740_0.575|GO:0044238_0.569|GO:0044237_0.567|GO:0009058_0.558|GO:0016746_0.554|GO:0016747_0.543|GO:0043170_0.542|GO:0004596_0.536|GO:0008080_0.536|GO:0016407_0.536|GO:0016410_0.536|GO:0034212_0.536|GO:0044249_0.532|GO:0009059_0.521|GO:0019538_0.521|GO:0010467_0.509
|
IPR000182+16-175_89-152+|IPR016181+17-175+|IPR045141+17-206+
|
— |
PF00583+89-152+Acetyltransferase_(GNAT)_family
|
— |
PTHR14744+17-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
226-228
|
1.000
|
1-225
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
26399.220
|
7.976
|
5.500
|
23.246
|
17.982
|
43.860
|
56.140
|
13.596
|
9.649
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
orange
|
763.894
|
525.716
|
821.210
|
666.675
|
817.240
|
1142.451
|
653.475
|
898.594
|
837.389
|
641.985
|
725.730
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.415
|
0.206
|
-0.193
|
0.261
|
0.499
|
-0.798
|
-0.452
|
-0.319
|
— | — | — | — | — |
No JSON data available for plots.