Hg_chrom8_TN10mRNA_15703
Organism: Heterodera glycines Gene Locus: chr8:5569875-5573242 Feature type: polypeptideProtein Sequence
Length: 815
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.027 | 1.484 | 0.759 | 0.719 | 1.043 | 1.73 | 0.876 | 1.411 | 0.791 | 0.962 | 0.558 | 1.949 | 0.852 | 0.967 | 1.352 | 1.543 | 1.126 | 0.539 | 0.472 | 0.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14835
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,PKRPR,RSAKRKN,AKRKNDGRRKRR,RRMLQAQMDGEVDRVKQR
|
15-49
|
0.998
|
1-34
|
0.980
|
— | — |
0.000
|
— | — |
0.938
|
0.084
|
0.024
|
0.312
|
0.031
|
0.020
|
0.022
|
0.086
|
0.038
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012015
|
1.000
|
1.000
|
Hsc_gene_6566.t1
|
Hsc_gene_6565.t1;Hsc_gene_6566.t1
|
— | — |
CAD2208834.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+25-47_169-190_424-446+
|
SM00355+25-47_169-190_424-446+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;99-437;602-687;800-815
|
3.000
|
13-98;438-601;688-799
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
88871.780
|
7.387
|
10.500
|
23.558
|
7.607
|
54.356
|
45.644
|
13.129
|
10.429
|
55.092
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
384.830
|
596.307
|
342.793
|
236.914
|
166.077
|
314.380
|
386.457
|
454.378
|
428.248
|
425.957
|
426.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.028
|
-1.469
|
-0.424
|
-0.544
|
0.935
|
0.309
|
0.432
|
— | — | — | — | — | — |
No JSON data available for plots.