Hg_chrom8_TN10mRNA_15704
Organism: Heterodera glycines Gene Locus: chr8:5573896-5574965 Feature type: polypeptideProtein Sequence
Length: 177
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.131 | 1.708 | 1.644 | 0.39 | 1.507 | 0.29 | 1.009 | 1.695 | 0.502 | 0.916 | 1.541 | 0.332 | 0.628 | 0.326 | 2.537 | 0.323 | 0.278 | 2.397 | 0.0 | 0.997 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14836
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_6564
|
— |
2-Not_Clustered
|
0.782
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus|extracellular
|
nucleus
|
KRKKR,KKKRVHLKVLDKLRKY,RKYDSEESGERRRHRV,GERRRHRVVKIERDGGRR,RRRHRVVKIERDGGRRHKT
|
— | — | — | — |
1-23
|
0.987
|
1.000
|
0.000
|
0.000
|
0.604
|
0.540
|
0.059
|
0.383
|
0.110
|
0.046
|
0.044
|
0.018
|
0.189
|
0.847
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012016
|
1.000
|
1.000
|
Hsc_gene_6564.t1
|
Hsc_gene_6564.t1
|
— | — | — |
PTT31536
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
107-177
|
1.000
|
1-106
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
20663.410
|
9.986
|
11.000
|
44.068
|
9.040
|
56.497
|
43.503
|
25.989
|
18.079
|
48.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
6903.389
|
387.623
|
18002.028
|
13900.707
|
14011.402
|
8405.781
|
7308.511
|
3373.819
|
726.232
|
5136.450
|
3246.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.305
|
5.027
|
-0.262
|
— |
-0.722
|
-0.192
|
-1.408
|
1.251
|
-2.964
|
4.446
|
2.295
|
— | — |