Hg_chrom8_TN10mRNA_15709
Organism: Heterodera glycines Gene Locus: chr8:5587258-5588979 Feature type: polypeptideProtein Sequence
Length: 401
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.102 | 1.624 | 0.861 | 0.172 | 0.499 | 1.407 | 0.831 | 1.247 | 0.998 | 1.213 | 0.529 | 1.174 | 1.593 | 1.487 | 0.967 | 1.104 | 0.818 | 1.02 | 0.575 | 0.88 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14841
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-25
|
0.938
|
1.000
|
0.000
|
0.000
|
0.064
|
0.366
|
0.204
|
0.189
|
0.139
|
0.085
|
0.161
|
0.069
|
0.144
|
0.954
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012020
|
1.000
|
1.000
|
Hsc_gene_6559.t1
|
Hsc_gene_6559.t1
|
— | — |
KAI1725867.1 LiPocalin-Related protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012674+224-380_226-394+|IPR047202+230-384+
|
— | — |
G3DSA:2.40.128.20:FF:000019+223-380+LiPocalin-Related_protein
|
PTHR37437+94-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
39-134
|
2.000
|
1-38;135-401
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
43876.690
|
8.426
|
7.000
|
18.454
|
11.970
|
43.641
|
56.359
|
10.723
|
7.731
|
55.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
yellow
|
972.333
|
761.153
|
505.106
|
143.985
|
1695.033
|
2581.498
|
214.246
|
335.344
|
1993.173
|
420.439
|
1094.468
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.822
|
-2.539
|
-1.701
|
3.524
|
0.624
|
-3.582
|
-3.058
|
-0.502
|
— |
-3.626
|
— | — | — |