Hg_chrom8_TN10mRNA_15711
Organism: Heterodera glycines Gene Locus: chr8:5590053-5592087 Feature type: polypeptideProtein Sequence
Length: 407
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 0.857 | 0.849 | 0.424 | 0.942 | 0.756 | 0.819 | 1.474 | 1.42 | 1.229 | 0.856 | 1.879 | 1.365 | 0.945 | 1.504 | 0.807 | 0.886 | 1.042 | 1.512 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14843
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
plastid
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.242
|
0.504
|
0.528
|
0.386
|
0.314
|
0.379
|
0.473
|
0.133
|
0.161
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004764
|
2.000
|
1.000
|
Hsc_gene_6557.t1
|
Hsc_gene_6557.t1
|
— |
Q09621.1 Beta-lactamase domain-containing protein 2 [Caenorhabditis elegans]
|
KAH7715102.1 Protein LACT-2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.926|GO:0003674_0.869|GO:0008152_0.814|GO:0003824_0.784|GO:0009056_0.702|GO:0009987_0.699|GO:0016787_0.693|GO:0044238_0.629|GO:0044237_0.619|GO:0006629_0.531|GO:0044248_0.527|GO:0044255_0.524|GO:0016042_0.517|GO:0044242_0.516|GO:0046486_0.516|GO:0016788_0.512|GO:0046503_0.511
|
IPR001466+22-385+|IPR012338+9-402_11-393+|IPR052907+6-403+
|
— |
PF00144+22-385+Beta-lactamase
|
— |
PTHR43319+6-403+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-407
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
45914.150
|
9.810
|
17.000
|
26.290
|
12.039
|
43.980
|
56.020
|
15.971
|
10.319
|
47.666
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
2402.503
|
55.608
|
907.087
|
2255.106
|
5712.765
|
8593.725
|
2648.278
|
3537.295
|
458.162
|
1276.128
|
925.571
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.800
|
5.203
|
1.421
|
1.309
|
0.604
|
-1.688
|
-1.389
|
— | — | — |
2.854
|
— | — |
No JSON data available for plots.