Hg_chrom8_TN10mRNA_15712
Organism: Heterodera glycines Gene Locus: chr8:5592472-5594705 Feature type: polypeptideProtein Sequence
Length: 430
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 0.811 | 0.93 | 0.16 | 0.93 | 0.894 | 0.886 | 1.395 | 1.395 | 1.194 | 0.987 | 1.505 | 1.55 | 0.716 | 1.661 | 0.963 | 0.877 | 0.951 | 1.61 | 0.616 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14844
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.222
|
0.543
|
0.446
|
0.362
|
0.288
|
0.399
|
0.354
|
0.292
|
0.171
|
0.275
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004764
|
2.000
|
1.000
|
Hsc_gene_6557.t1
|
Hsc_gene_6556.t1
|
— |
Q09621.1 Beta-lactamase domain-containing protein 2 [Caenorhabditis elegans]
|
KAH7715102.1 Protein LACT-2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.933|GO:0003674_0.867|GO:0008152_0.803|GO:0003824_0.765|GO:0009987_0.701|GO:0009056_0.697|GO:0016787_0.694|GO:0044238_0.616|GO:0044237_0.605|GO:0006629_0.520|GO:0044248_0.520|GO:0044255_0.516|GO:0016042_0.511|GO:0046486_0.510|GO:0044242_0.509|GO:0046503_0.506|GO:0016788_0.505
|
IPR001466+22-389+|IPR012338+9-401_11-382+|IPR052907+7-403+
|
— |
PF00144+22-389+Beta-lactamase
|
— |
PTHR43319+7-403+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
408-430
|
1.000
|
1-407
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
48846.200
|
10.388
|
23.000
|
28.140
|
12.558
|
47.209
|
52.791
|
17.442
|
10.698
|
46.047
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
purple
|
340.175
|
61.759
|
163.056
|
208.081
|
397.498
|
1018.547
|
427.770
|
468.940
|
172.741
|
329.091
|
262.084
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.171
|
1.616
|
0.461
|
0.903
|
1.372
|
-1.241
|
-1.233
|
— | — | — | — |
9.147
|
— |
No JSON data available for plots.