Hg_chrom8_TN10mRNA_15714
Organism: Heterodera glycines Gene Locus: chr8:5597344-5600239 Feature type: polypeptideProtein Sequence
Length: 515
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 1.129 | 0.565 | 0.87 | 0.809 | 1.444 | 1.063 | 1.942 | 0.734 | 0.892 | 0.706 | 1.599 | 1.348 | 0.822 | 1.862 | 0.749 | 1.21 | 0.824 | 1.494 | 0.628 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14846
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
LGEV,RRRKEQRRPQWR,RKRRTTAEEGPKRNKT,KRNKTIQPFSAAFGGRRRT,KRFIEQHQRDEDRRRKEQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.297
|
0.196
|
0.054
|
0.399
|
0.235
|
0.062
|
0.173
|
0.027
|
0.235
|
0.491
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004654
|
3.000
|
0.000
|
0.000
|
Hsc_gene_10355.t1;Hsc_gene_10365.t1;Hsc_gene_23788.t1;Hsc_gene_23788.t2;Hsc_gene_23790.t1;Hsc_gene_23795.t1;Hsc_gene_6516.t1;Hsc_gene_6521.t1;Hsc_gene_6554.t1
|
— |
A2A8Z1.1 Oxysterol-binding protein-related protein 9 [Mus musculus]
|
KAF7638107.1 Oxysterol-binding protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.824|GO:0110165_0.824|GO:0008150_0.811|GO:0009987_0.698|GO:0005622_0.695|GO:0016020_0.684|GO:0043226_0.617|GO:0043229_0.602|GO:0005737_0.567|GO:0003674_0.565|GO:0043227_0.565|GO:0043231_0.546|GO:0071944_0.532
|
IPR000648+202-498_204-512+|IPR018494+278-288+|IPR037239+204-507+
|
— |
PF01237+204-512+Oxysterol-binding_protein
|
— |
PTHR10972+202-498+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21;74-135;469-515
|
2.000
|
22-73;136-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
57957.870
|
10.489
|
40.000
|
25.631
|
12.816
|
48.738
|
51.262
|
17.670
|
7.961
|
50.291
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1296.124
|
1768.895
|
998.779
|
1083.087
|
1156.527
|
2715.693
|
1188.960
|
3343.081
|
234.888
|
898.742
|
614.233
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.055
|
-0.845
|
0.226
|
— |
1.246
|
-1.181
|
— |
-1.345
|
— | — | — | — | — |
No JSON data available for plots.