Hg_chrom8_TN10mRNA_15715
Organism: Heterodera glycines Gene Locus: chr8:5600705-5602464 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.515 | 1.212 | 0.592 | 1.685 | 0.543 | 0.418 | 0.582 | 1.466 | 0.579 | 1.012 | 0.642 | 1.724 | 0.995 | 1.253 | 1.462 | 1.256 | 1.282 | 0.938 | 2.005 | 0.287 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14847
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
53-73
|
0.926
|
28-68
|
0.999
|
— | — |
0.000
|
— | — |
0.548
|
0.220
|
0.068
|
0.545
|
0.160
|
0.099
|
0.101
|
0.029
|
0.065
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004762
|
3.000
|
0.000
|
0.000
|
Hsc_gene_6518.t1
|
— |
O62106.1 Eukaryotic translation initiation factor 6 [Caenorhabditis elegans]
|
KAH7698566.1 Eukaryotic translation initiation factor 6 [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0042256|GO:0043022
|
GO:0005575_0.783|GO:0110165_0.776|GO:0008150_0.764|GO:0009987_0.698|GO:0016020_0.689|GO:0005622_0.669|GO:0043226_0.620|GO:0043229_0.615|GO:0043227_0.600|GO:0043231_0.586|GO:0005737_0.521|GO:0005634_0.503
|
IPR002769+213-271_215-305+|IPR011990+45-125_80-124+
|
— |
PF01912+213-271+eIF-6_family
|
— |
PTHR10784+215-305+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-307
|
9qiw_CA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
33399.380
|
9.345
|
19.500
|
20.847
|
10.098
|
44.300
|
55.700
|
14.332
|
6.515
|
60.586
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
510.219
|
1287.499
|
1084.774
|
845.644
|
734.816
|
550.935
|
568.444
|
599.029
|
134.200
|
4.880
|
60.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.478
|
-0.744
|
-0.250
|
-0.235
|
-0.401
|
— | — | — | — | — |
7.134
|
— | — |
No JSON data available for plots.