Hg_chrom8_TN10mRNA_15717
Organism: Heterodera glycines Gene Locus: chr8:5606916-5609012 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.22 | 0.73 | 1.064 | 1.132 | 1.108 | 1.102 | 1.389 | 0.892 | 1.168 | 0.514 | 1.634 | 1.2 | 0.712 | 1.575 | 0.794 | 1.619 | 0.608 | 1.425 | 0.091 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14849
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RKRRTTAEEGPKRNKT,KRNKTIQPFSAAFGGRRRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.556
|
0.134
|
0.041
|
0.307
|
0.133
|
0.030
|
0.060
|
0.009
|
0.115
|
0.500
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004654
|
3.000
|
0.000
|
0.000
|
Hsc_gene_6516.t1;Hsc_gene_6521.t1
|
— | — |
KAI1717805.1 ankyrin repeat and LEM domain-containing protein 1 [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004519
|
GO:0008150_0.938|GO:0009987_0.869|GO:0008152_0.786|GO:0044238_0.775|GO:0043170_0.755|GO:0006139_0.723|GO:0090304_0.705|GO:0005575_0.691|GO:0110165_0.672|GO:0003674_0.647|GO:0005622_0.579|GO:0032502_0.563|GO:0048856_0.563|GO:0050896_0.543|GO:0043226_0.535|GO:0005737_0.528|GO:0043229_0.515|GO:0051716_0.514
|
IPR034998+227-317+
|
— |
PF22945+227-323+LEM-3-like_GIY-YIG_domain
|
— |
PTHR46427+227-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-80;132-193
|
2.000
|
81-131;194-324
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
35717.340
|
7.597
|
5.500
|
24.691
|
9.259
|
49.691
|
50.309
|
13.889
|
10.802
|
53.086
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
cyan
|
113.520
|
111.573
|
106.812
|
98.657
|
135.126
|
130.088
|
392.045
|
109.184
|
45.419
|
56.278
|
51.624
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.292
|
-0.315
|
— |
0.423
|
— |
1.604
|
— |
1.991
|
— | — | — | — | — |
No JSON data available for plots.