Hg_chrom8_TN10mRNA_15718
Organism: Heterodera glycines Gene Locus: chr8:5612618-5613562 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.028 | 1.413 | 0.904 | 0.381 | 1.013 | 0.992 | 0.789 | 1.381 | 0.614 | 1.12 | 0.502 | 0.975 | 1.535 | 1.381 | 1.015 | 0.789 | 1.268 | 0.753 | 1.275 | 1.787 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14850
|
— | — |
3.444
|
5.000
|
4.000
|
1.000
|
4.000
|
3.000
|
5.000
|
2.000
|
4.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
golgi_apparatus
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.290
|
0.113
|
0.006
|
0.432
|
0.503
|
0.206
|
0.538
|
0.001
|
0.377
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000443
|
1.000
|
7.000
|
Hsc_gene_10355.t1;Hsc_gene_10365.t1;Hsc_gene_23788.t1;Hsc_gene_23788.t2;Hsc_gene_23790.t1;Hsc_gene_23795.t1;Hsc_gene_6554.t1
|
Hsc_gene_10355.t1;Hsc_gene_10365.t1;Hsc_gene_23788.t1;Hsc_gene_23788.t2;Hsc_gene_23790.t1;Hsc_gene_23795.t1;Hsc_gene_6554.t1
|
— |
A2A8Z1.1 Oxysterol-binding protein-related protein 9 [Mus musculus]
|
KAF7638107.1 Oxysterol-binding protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.808|GO:0110165_0.808|GO:0008150_0.788|GO:0005622_0.719|GO:0009987_0.663|GO:0005737_0.647|GO:0016020_0.642|GO:0043226_0.632|GO:0043229_0.600|GO:0043227_0.586|GO:0043231_0.570|GO:0003674_0.516
|
IPR000648+23-175_49-175+|IPR018494+158-168+|IPR037239+30-180+
|
— |
PF01237+49-175+Oxysterol-binding_protein
|
G3DSA:1.10.287.2720:FF:000001+56-121+Oxysterol-binding_OBPalpha
|
PTHR10972+23-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
20437.810
|
5.578
|
-2.500
|
22.099
|
16.022
|
45.304
|
54.696
|
11.050
|
11.050
|
53.039
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
401.574
|
25.294
|
35.863
|
59.874
|
167.548
|
885.044
|
128.406
|
1073.215
|
0.000
|
866.168
|
494.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.105
|
0.854
|
1.453
|
2.415
|
-2.774
|
— |
-2.916
|
-10.558
|
6.761
|
— | — | — |
No JSON data available for plots.