Hg_chrom8_TN10mRNA_15719
Organism: Heterodera glycines Gene Locus: chr8:5614738-5616982 Feature type: polypeptideProtein Sequence
Length: 354
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 0.92 | 1.079 | 0.487 | 0.753 | 0.724 | 0.639 | 0.847 | 1.82 | 1.145 | 1.113 | 2.493 | 0.628 | 1.086 | 1.095 | 1.251 | 0.834 | 1.327 | 0.0 | 1.08 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14851
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.827
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
PTDKRKG
|
50-70
|
0.938
|
— | — | — | — |
0.000
|
— | — |
0.510
|
0.281
|
0.069
|
0.637
|
0.258
|
0.163
|
0.133
|
0.006
|
0.137
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012022
|
1.000
|
1.000
|
Hsc_gene_6553.t1
|
Hsc_gene_6553.t1
|
— |
Q5ZL26.1 Phosphoribosyl pyrophosphate synthase-associated protein 2 [Gallus gallus]
|
KAI1726128.1 phosphoribosyl synthetase-associated domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0009165
|
GO:0008150_0.761|GO:0005575_0.754|GO:0110165_0.611|GO:0003674_0.568|GO:0008152_0.556|GO:0005622_0.547
|
IPR000836+152-308+|IPR005946+10-347_10-348_166-348+|IPR029057+9-161_10-155_156-324_166-347+|IPR029099+10-125+
|
SM01400+10-125+
|
PF13793+10-125+N-terminal_domain_of_ribose_phosphate_pyrophosphokinase|PF14572+166-348+Phosphoribosyl_synthetase-associated_domain
|
G3DSA:3.40.50.2020:FF:000031+13-151+Probable_PRS4-ribose-phosphate_pyrophosphokinase_3|G3DSA:3.40.50.2020:FF:000068+155-324+Predicted_protein
|
PTHR10210+10-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-354
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.854
|
39214.670
|
9.318
|
11.000
|
24.859
|
7.627
|
45.480
|
54.520
|
14.407
|
10.452
|
51.412
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
1594.953
|
1243.491
|
1631.803
|
1580.466
|
1560.061
|
1963.981
|
1328.983
|
2458.963
|
794.666
|
1969.015
|
1465.723
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.163
|
0.209
|
— | — |
0.347
|
-0.554
|
— |
-0.746
|
— | — | — | — | — |
No JSON data available for plots.