Hg_chrom8_TN10mRNA_15720
Organism: Heterodera glycines Gene Locus: chr8:5617512-5619560 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.626 | 1.073 | 0.839 | 0.265 | 0.769 | 0.592 | 0.916 | 1.538 | 2.222 | 1.04 | 1.166 | 2.715 | 1.709 | 0.444 | 1.884 | 0.769 | 0.631 | 1.282 | 0.592 | 0.226 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14852
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
23-43
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.399
|
0.356
|
0.073
|
0.420
|
0.172
|
0.045
|
0.126
|
0.055
|
0.061
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012023
|
1.000
|
1.000
|
Hsc_gene_6552.t1
|
Hsc_gene_6552.t1
|
— |
P62244.2 Small ribosomal subunit protein uS8 [Homo sapiens]
|
KAI1725350.1 ribosomal protein s8 domain-containing protein [Ditylenchus destructor];KAI1731846.1 ribosomal protein s8 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.826|GO:0110165_0.820|GO:0005622_0.738|GO:0043226_0.708|GO:0043229_0.708|GO:0005737_0.692|GO:0003674_0.592|GO:0008150_0.511|GO:0005829_0.502|GO:0043228_0.502
|
IPR000630+1-130_2-130_6-128+|IPR035987+3-130+|IPR047863+100-117+
|
— |
PF00410+6-128+Ribosomal_protein_S8
|
G3DSA:3.30.1370.30:FF:000001+1-69+40S_ribosomal_protein_S15a|G3DSA:3.30.1490.10:FF:000002+70-130+40S_ribosomal_protein_S15a
|
PTHR11758+1-130+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-130
|
7nwi_WW
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.496
|
14841.520
|
11.096
|
12.000
|
29.231
|
10.769
|
45.385
|
54.615
|
20.000
|
9.231
|
43.077
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
5456.026
|
1877.185
|
4014.980
|
6522.223
|
6626.294
|
5076.358
|
4557.598
|
2492.682
|
7033.754
|
6907.053
|
6961.354
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.868
|
1.660
|
0.808
|
— |
-0.369
|
— |
-1.136
|
1.015
|
— | — | — | — | — |
No JSON data available for plots.