Hg_chrom8_TN10mRNA_15721
Organism: Heterodera glycines Gene Locus: chr8:5619562-5620098 Feature type: polypeptideProtein Sequence
Length: 84
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.415 | 0.277 | 0.649 | 2.463 | 0.595 | 1.526 | 0.85 | 2.381 | 0.265 | 1.126 | 1.623 | 1.401 | 1.323 | 1.374 | 0.972 | 0.68 | 0.976 | 1.623 | 0.0 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14853
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.584
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.716
|
0.336
|
0.010
|
0.475
|
0.186
|
0.063
|
0.107
|
0.003
|
0.053
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P42677.3 Small ribosomal subunit protein eS27 [Homo sapiens]
|
ABR87563.1 small subunit ribosomal protein 27 [Pristionchus maupasi];ABR87564.1 small subunit ribosomal protein 27 [Pristionchus lheritieri];ABR87565.1 small subunit ribosomal protein 27 [Pristionchus entomophagus];ABR87566.1 small subunit ribosomal protein 27 [Pristionchus uniformis];ABR87567.1 small subunit ribosomal protein 27 [Pristionchus sp. 3 CZ3975];ABR87569.1 small subunit ribosomal protein 27 [Pristionchus aerivorus];ABR87570.1 small subunit ribosomal protein 27 [Pristionchus sp. 6 RS5101];ABR87571.1 small subunit ribosomal protein 27 [Pristionchus marianneae];ABR87572.1 small subunit ribosomal protein 27 [Pristionchus pauli];ABR87573.1 small subunit ribosomal protein 27 [Pristionchus pseudaerivorus];ABR87574.1 small subunit ribosomal protein 27 [Pristionchus sp. 10 RS5133];ABR87575.1 small subunit ribosomal protein 27 [Pristionchus sp. 11 RS5228];ABR87576.1 small subunit ribosomal protein 27 [Pristionchus americanus];ABR87577.1 small subunit ribosomal protein 27 [Pristionchus sp. 13 RS5231];ABR87579.1 small subunit ribosomal protein 27 [Pristionchus sp. 15 RS5229];AFL56715.1 small subunit ribosomal protein 27 [Pristionchus exspectatus];AFL56739.1 small subunit ribosomal protein 27 [Pristionchus arcanus];AGJ03576.1 small subunit ribosomal protein 27, partial [Pristionchus boliviae];AGJ03602.1 small subunit ribosomal protein 27, partial [Pristionchus mayeri];AGJ03626.1 small subunit ribosomal protein 27, partial [Pristionchus maxplancki];AGJ74559.1 small subunit ribosomal protein 27, partial [Pristionchus bucculentus];AGR33973.1 subunit ribosomal protein 27 [Pristionchus fukushimae];AHW80327.1 ribosomal protein [Pristionchus bulgaricus];AHW80351.1 ribosomal protein [Pristionchus clavus]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.930|GO:0110165_0.918|GO:0005622_0.793|GO:0005737_0.684|GO:0043226_0.655|GO:0043229_0.635|GO:0003674_0.627|GO:0008150_0.549|GO:0005829_0.537
|
IPR000592+1-83_22-82_28-82_36-68+|IPR011332+28-82+|IPR023407+1-84+
|
— |
PF01667+28-82+Ribosomal_protein_S27
|
G3DSA:2.20.25.100:FF:000001+1-84+40S_ribosomal_protein_S27
|
PTHR11594+1-83+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-84
|
7oyb_b2
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
9418.100
|
9.403
|
9.000
|
27.381
|
11.905
|
45.238
|
54.762
|
20.238
|
7.143
|
51.190
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
5415.578
|
1727.326
|
2908.553
|
5658.981
|
5673.434
|
4623.222
|
2778.547
|
1543.407
|
11483.838
|
5737.725
|
8200.345
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
1.575
|
1.070
|
— |
-0.280
|
-0.725
|
-1.689
|
0.991
|
— | — | — | — | — |
No JSON data available for plots.