Hg_chrom8_TN10mRNA_15722
Organism: Heterodera glycines Gene Locus: chr8:5620521-5621972 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 1.026 | 0.446 | 0.338 | 1.389 | 2.514 | 0.642 | 0.49 | 1.089 | 0.994 | 2.302 | 2.307 | 0.545 | 0.566 | 1.401 | 1.19 | 0.241 | 0.594 | 0.754 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14854
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKATKSKKAFPSKKLNK,EQKKATKSKKAFPSKKL,KKGMRFRYKLSAVKRQNKK
|
13-63
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.844
|
0.084
|
0.005
|
0.260
|
0.017
|
0.034
|
0.046
|
0.000
|
0.034
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004766
|
1.000
|
2.000
|
Hsc_gene_6551.t1;Hsc_gene_6551.t2
|
Hsc_gene_6551.t1;Hsc_gene_6551.t2
|
— |
Q4SQ06.1 Nucleolar protein 16 [Tetraodon nigroviridis]
|
KAI1721585.1 ribosome biogenesis protein nop16 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.950|GO:0110165_0.947|GO:0005622_0.934|GO:0043226_0.910|GO:0043229_0.896|GO:0016020_0.879|GO:0043227_0.843|GO:0003674_0.835|GO:0005488_0.835|GO:0043231_0.816|GO:0043228_0.796|GO:0043232_0.796|GO:0005634_0.768|GO:0097159_0.738|GO:0003676_0.732|GO:0003723_0.693|GO:0031974_0.656|GO:0031981_0.656|GO:0043233_0.656|GO:0070013_0.656|GO:0005654_0.601|GO:0005730_0.594
|
IPR019002+9-200_15-195+
|
— |
PF09420+15-195+Ribosome_biogenesis_protein_Nop16
|
— |
PTHR13243+9-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-204
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
23435.150
|
10.846
|
24.000
|
33.824
|
5.882
|
57.843
|
42.157
|
23.039
|
10.784
|
37.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1341.380
|
930.189
|
773.207
|
1627.758
|
1470.424
|
1138.025
|
774.548
|
604.491
|
1907.481
|
1693.435
|
1785.169
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.497
|
0.670
|
1.183
|
-0.179
|
-0.355
|
-0.544
|
-1.016
|
0.500
|
— | — | — | — | — |
No JSON data available for plots.