Hg_chrom8_TN10mRNA_15724
Organism: Heterodera glycines Gene Locus: chr8:5622214-5624857 Feature type: polypeptideProtein Sequence
Length: 281
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.828 | 1.159 | 0.776 | 1.35 | 1.127 | 1.004 | 0.932 | 1.957 | 0.87 | 1.058 | 0.863 | 1.047 | 1.087 | 1.095 | 1.525 | 1.017 | 0.875 | 0.917 | 1.095 | 0.314 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14855
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRQQKEDESAALLDLKKLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.279
|
0.179
|
0.007
|
0.719
|
0.060
|
0.194
|
0.336
|
0.111
|
0.233
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002501
|
2.000
|
2.000
|
Hsc_gene_6550.t1;Hsc_gene_6550.t2
|
Hsc_gene_6550.t1;Hsc_gene_6550.t2
|
— |
Q09476.2 Paxillin homolog 1 [Caenorhabditis elegans]
|
KAI1722766.1 LIM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.887|GO:0110165_0.887|GO:0008150_0.853|GO:0003674_0.684|GO:0009987_0.665|GO:0005622_0.659|GO:0005488_0.614|GO:0005515_0.580|GO:0065007_0.569|GO:0050789_0.553|GO:0043226_0.551|GO:0050794_0.529|GO:0043229_0.515|GO:0050896_0.513|GO:0016020_0.505
|
IPR001781+105-164_106-157_107-140_107-162_165-217_166-200_166-210+|IPR050604+77-213+
|
SM00132+106-157_165-217+
|
PF00412+107-162_166-210+LIM_domain
|
G3DSA:2.10.110.10:FF:000008+101-159+Paxillin_isoform_1|G3DSA:2.10.110.10:FF:000018+160-216+Paxillin_isoform_1
|
PTHR24214+77-213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-98
|
1.000
|
99-281
|
7qb0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.887
|
31250.490
|
8.436
|
11.500
|
28.114
|
10.320
|
49.466
|
50.534
|
17.082
|
11.032
|
52.313
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2561.127
|
4036.696
|
3929.849
|
2184.234
|
951.703
|
1857.435
|
808.670
|
8432.318
|
733.588
|
2329.399
|
1645.480
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.268
|
-1.023
|
-0.739
|
-1.230
|
0.979
|
-1.189
|
2.079
|
-3.239
|
— | — | — | — | — |
No JSON data available for plots.