Hg_chrom8_TN10mRNA_15725
Organism: Heterodera glycines Gene Locus: chr8:5630387-5639432 Feature type: polypeptideProtein Sequence
Length: 860
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 1.082 | 1.078 | 0.682 | 1.977 | 1.342 | 0.817 | 0.93 | 0.517 | 1.367 | 1.11 | 0.752 | 0.969 | 0.514 | 1.4 | 1.113 | 0.991 | 0.634 | 1.431 | 0.308 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14856
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
nucleus
|
— |
RKKQR,RQSPRGTRR,RRSHPSSSTTTRKRTL,KKEKEEEKEKEGPKAKRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.499
|
0.164
|
0.013
|
0.293
|
0.386
|
0.136
|
0.287
|
0.041
|
0.155
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012024
|
1.000
|
1.000
|
Hsc_gene_6549.t1
|
Hsc_gene_6549.t1
|
— | — |
KAI1722761.1 nuclear migration protein unc-83 [Ditylenchus destructor]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;143-550
|
2.000
|
21-142;551-860
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
97351.180
|
4.991
|
-23.000
|
33.837
|
8.256
|
57.558
|
42.442
|
16.047
|
17.791
|
46.744
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3651.776
|
10142.424
|
6376.910
|
3198.281
|
2831.055
|
2921.079
|
2450.411
|
4104.015
|
2760.701
|
1896.928
|
2267.117
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.898
|
-1.802
|
-0.887
|
-0.208
|
— |
-0.243
|
0.388
|
-0.603
|
— | — | — | — | — |
No JSON data available for plots.