Hg_chrom8_TN10mRNA_15726
Organism: Heterodera glycines Gene Locus: chr8:5639638-5640925 Feature type: polypeptideProtein Sequence
Length: 173
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.672 | 0.941 | 0.841 | 0.598 | 0.578 | 1.334 | 0.826 | 2.312 | 0.899 | 1.172 | 0.788 | 1.02 | 0.963 | 0.889 | 1.18 | 1.817 | 0.948 | 1.139 | 0.889 | 0.85 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14857
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.565
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
30-69
|
0.985
|
56-86
|
0.973
|
— | — |
0.000
|
— | — |
0.480
|
0.391
|
0.047
|
0.679
|
0.095
|
0.354
|
0.163
|
0.081
|
0.173
|
0.273
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012025
|
1.000
|
1.000
|
Hsc_gene_6548.t1
|
Hsc_gene_6548.t1
|
— | — |
KAI1725077.1 HIUase/Transthyretin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006144|GO:0033971
|
GO:0008150_0.778|GO:0005575_0.771|GO:0003674_0.758|GO:0110165_0.686|GO:0005488_0.543|GO:0005622_0.502
|
IPR000895+62-82_96-121_122-151+|IPR014306+62-172+|IPR023416+50-172_63-172+|IPR036817+53-171_58-172+
|
— |
PF00576+63-172+HIUase/Transthyretin_family
|
— |
PTHR10395+50-172+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32
|
1.000
|
33-173
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.948
|
19129.600
|
9.454
|
9.000
|
23.699
|
12.139
|
51.445
|
48.555
|
15.607
|
8.092
|
53.757
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
346.486
|
250.619
|
421.391
|
369.726
|
175.521
|
132.643
|
509.073
|
305.796
|
314.318
|
468.347
|
402.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
0.423
|
— |
-1.109
|
-0.389
|
1.952
|
1.103
|
0.877
|
— | — | — | — | — |
No JSON data available for plots.