Hg_chrom8_TN10mRNA_15727
Organism: Heterodera glycines Gene Locus: chr8:5642438-5648016 Feature type: polypeptideProtein Sequence
Length: 1,308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.925 | 1.013 | 0.737 | 0.58 | 1.185 | 1.411 | 0.746 | 1.261 | 1.07 | 1.064 | 0.73 | 0.899 | 1.041 | 0.912 | 1.482 | 1.474 | 1.065 | 0.915 | 1.235 | 0.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14858
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKREGKKGRKG,RRESNQRNSMWRRSKRQIR,KKTDLAMETPSKFCKKREG,KKGRKGAQGEDDEEKRRTS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.396
|
0.221
|
0.071
|
0.564
|
0.244
|
0.226
|
0.177
|
0.096
|
0.256
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012026
|
1.000
|
1.000
|
Hsc_gene_6547.t1
|
Hsc_gene_6547.t1
|
— |
Q9JIL5.1 Tubby-related protein 4 [Mus musculus]
|
KAI3411795.1 Tubulin beta chain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.876|GO:0005575_0.872|GO:0110165_0.870|GO:0009987_0.767|GO:0005622_0.723|GO:0016020_0.708|GO:0065007_0.662|GO:0050789_0.642|GO:0050794_0.626|GO:0071944_0.612|GO:0005886_0.594|GO:0043226_0.577|GO:0003674_0.561|GO:0005737_0.539|GO:0043227_0.514|GO:0005488_0.510
|
IPR000007+1217-1303_1232-1249_1250-1266_1288-1308+|IPR001680+58-97_65-96_98-140_142-180_233-271+|IPR015943+12-153_154-316+|IPR025659+507-1307_1155-1304+|IPR036322+17-304+
|
SM00320+58-97_98-140_142-180_233-271+
|
PF01167+1217-1303+Tub_family
|
— |
PTHR16517+323-1308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
586-968;1167-1234
|
3.000
|
1-585;969-1166;1235-1308
|
2fim_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
145139.360
|
8.479
|
28.500
|
25.765
|
9.174
|
52.446
|
47.554
|
14.602
|
11.162
|
51.911
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
3456.735
|
9348.692
|
4355.232
|
2468.809
|
2101.422
|
2508.204
|
2628.258
|
3023.129
|
3521.669
|
2569.309
|
2977.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.331
|
-2.058
|
-0.711
|
-0.264
|
0.270
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.