Hg_chrom8_TN10mRNA_15728
Organism: Heterodera glycines Gene Locus: chr8:5648111-5649758 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 1.129 | 0.794 | 0.0 | 1.214 | 1.494 | 0.751 | 0.971 | 1.187 | 1.378 | 1.839 | 1.142 | 1.214 | 0.467 | 0.892 | 1.04 | 0.637 | 1.397 | 0.0 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14859
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.091
|
0.938
|
0.010
|
0.090
|
0.033
|
0.035
|
0.031
|
0.011
|
0.046
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012027
|
1.000
|
1.000
|
Hsc_gene_6546.t1
|
Hsc_gene_6546.t1
|
— |
Q24439.2 ATP synthase subunit O, mitochondrial [Drosophila melanogaster]
|
KAH7722372.1 ATP-3 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015986|GO:0016020|GO:0046933
|
GO:0005575_0.936|GO:0110165_0.931|GO:0005622_0.818|GO:0016020_0.815|GO:0005737_0.748|GO:0043226_0.727|GO:0043229_0.712|GO:0043227_0.674|GO:0043231_0.647|GO:0008150_0.519
|
IPR000711+12-202_25-204_29-48_29-199_32-199_99-110_110-124_162-177_177-195+|IPR020781+164-183+|IPR026015+25-131_28-123+
|
— |
PF00213+29-199+ATP_synthase_delta_(OSCP)_subunit
|
— |
PTHR11910+12-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
9b3j_O
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
23100.740
|
10.337
|
12.000
|
30.097
|
8.252
|
51.942
|
48.058
|
18.447
|
11.650
|
44.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2596.559
|
627.489
|
2133.767
|
3454.770
|
5076.182
|
4074.502
|
3094.596
|
2907.585
|
1510.537
|
2213.710
|
1912.350
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.537
|
2.324
|
0.804
|
0.523
|
-0.302
|
-0.386
|
-0.594
|
— | — | — | — | — | — |
No JSON data available for plots.