Hg_chrom8_TN10mRNA_15731
Organism: Heterodera glycines Gene Locus: chr8:5655780-5656675 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 1.368 | 1.07 | 0.225 | 1.525 | 0.67 | 0.389 | 0.654 | 0.871 | 1.237 | 1.188 | 1.538 | 1.271 | 1.257 | 1.601 | 0.84 | 0.643 | 0.792 | 1.006 | 1.153 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14862
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.820
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.470
|
0.187
|
0.012
|
0.595
|
0.179
|
0.219
|
0.417
|
0.043
|
0.121
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012030
|
1.000
|
1.000
|
Hsc_gene_6542.t1
|
Hsc_gene_6542.t1
|
— |
Q7K738.1 Ubiquitin-conjugating enzyme E2-18 kDa [Drosophila melanogaster]
|
KAI3411798.1 Ubiquitin-conjugating enzyme E2 L3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.835|GO:0003674_0.761|GO:0008152_0.699|GO:0044238_0.684|GO:0043170_0.659|GO:0003824_0.650|GO:0019538_0.628|GO:0016740_0.613|GO:0140096_0.595|GO:0016746_0.592|GO:0016755_0.584|GO:0019787_0.584|GO:0005575_0.562|GO:0004842_0.553|GO:0110165_0.548|GO:0005622_0.523
|
IPR000608+3-150_5-145_7-144+|IPR016135+2-153_3-150+|IPR023313+76-91+|IPR050113+3-149+
|
SM00212+6-150+
|
PF00179+7-144+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000011+1-153+Ubiquitin-conjugating_enzyme_E2_L3
|
PTHR24067+3-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12
|
1.000
|
13-153
|
4q5h_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
17724.170
|
7.997
|
2.000
|
32.026
|
11.111
|
50.327
|
49.673
|
16.993
|
15.033
|
45.752
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
1963.374
|
830.162
|
1067.031
|
1858.981
|
2471.256
|
1962.775
|
2522.644
|
1660.690
|
827.634
|
3328.959
|
2256.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.133
|
1.026
|
0.910
|
0.379
|
-0.317
|
0.373
|
-0.345
|
0.746
|
— | — | — | — | — |
No JSON data available for plots.