Hg_chrom8_TN10mRNA_15732
Organism: Heterodera glycines Gene Locus: chr8:5657057-5657773 Feature type: polypeptideProtein Sequence
Length: 194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.719 | 0.36 | 0.937 | 0.355 | 1.117 | 1.322 | 0.552 | 1.804 | 1.145 | 1.323 | 1.874 | 0.606 | 1.289 | 1.09 | 1.262 | 0.515 | 0.845 | 1.484 | 0.397 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14863
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKMSGCHVIFIAKRRIL,KRRILPKPQRGKNRKPLGQKRPRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.446
|
0.290
|
0.040
|
0.585
|
0.201
|
0.084
|
0.047
|
0.001
|
0.062
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012031
|
1.000
|
1.000
|
Hsc_gene_6541.t1
|
Hsc_gene_6541.t1
|
— |
Q9NB21.1 Small ribosomal subunit protein eS7 [Culex quinquefasciatus]
|
KAI3411799.1 40S ribosomal protein S7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.868|GO:0110165_0.868|GO:0005622_0.805|GO:0043226_0.781|GO:0043229_0.778|GO:0005737_0.708|GO:0043228_0.621|GO:0043232_0.621|GO:0016020_0.615|GO:0003674_0.614|GO:0043227_0.571|GO:0043231_0.566|GO:0005829_0.563|GO:0008150_0.563|GO:0009987_0.522
|
IPR000554+1-191_8-189+
|
— |
PF01251+8-189+Ribosomal_protein_S7e
|
— |
PTHR11278+1-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-194
|
8q87_Ag
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
22234.040
|
10.431
|
16.500
|
34.021
|
10.825
|
49.485
|
50.515
|
22.165
|
11.856
|
42.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
7736.399
|
3555.294
|
5183.932
|
8456.708
|
9538.089
|
7729.284
|
5904.133
|
3627.394
|
11338.380
|
8844.896
|
9913.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.316
|
1.113
|
0.814
|
0.141
|
-0.288
|
-0.378
|
-1.199
|
0.847
|
— | — | — | — | — |
No JSON data available for plots.