Hg_chrom8_TN10mRNA_15733
Organism: Heterodera glycines Gene Locus: chr8:5658035-5659730 Feature type: polypeptideProtein Sequence
Length: 285
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 0.49 | 0.893 | 0.484 | 0.994 | 0.81 | 0.627 | 0.877 | 1.871 | 1.091 | 1.329 | 1.032 | 1.267 | 0.675 | 1.289 | 1.253 | 1.15 | 1.116 | 1.08 | 0.722 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14864
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — |
66-86
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.854
|
0.251
|
0.027
|
0.437
|
0.046
|
0.042
|
0.048
|
0.095
|
0.025
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012032
|
1.000
|
1.000
|
Hsc_gene_6540.t1
|
Hsc_gene_6540.t1
|
— |
Q9U6P6.1 Ribonuclease H2 subunit A [Caenorhabditis elegans]
|
KAF7634880.1 Ribonuclease [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0004523|GO:0016070
|
GO:0008150_0.917|GO:0008152_0.776|GO:0044238_0.764|GO:0009987_0.737|GO:0043170_0.735|GO:0006139_0.714|GO:0090304_0.700|GO:0005575_0.685|GO:0003674_0.572|GO:0110165_0.555|GO:0006259_0.551|GO:0050896_0.533|GO:0051716_0.507|GO:0005622_0.501
|
IPR001352+1-265+|IPR004649+1-224+|IPR012337+1-225+|IPR023160+182-229+|IPR024567+1-220_1-229+|IPR036397+1-177+
|
— |
PF01351+1-220+Ribonuclease_HII
|
G3DSA:1.10.10.460:FF:000001+181-228+Ribonuclease|G3DSA:3.30.420.10:FF:000016+1-177+Ribonuclease
|
PTHR10954+1-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-285
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
32080.200
|
10.048
|
14.500
|
27.719
|
10.175
|
48.772
|
51.228
|
16.842
|
10.877
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
560.979
|
720.668
|
428.288
|
415.822
|
551.031
|
454.435
|
843.091
|
535.789
|
612.022
|
514.345
|
556.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.981
|
-0.930
|
— |
0.374
|
-0.264
|
0.902
|
— |
0.797
|
— | — | — | — | — |
No JSON data available for plots.