Hg_chrom8_TN10mRNA_15734
Organism: Heterodera glycines Gene Locus: chr8:5660354-5663838 Feature type: polypeptideProtein Sequence
Length: 695
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.937 | 0.903 | 0.942 | 0.893 | 1.127 | 1.033 | 0.942 | 1.295 | 1.055 | 1.147 | 1.003 | 1.523 | 1.239 | 0.775 | 1.263 | 1.11 | 0.991 | 0.872 | 0.885 | 0.339 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14865
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRVALVEVKQTSGRKGRS
|
— | — |
28-52
|
0.970
|
— | — |
0.000
|
— | — |
0.278
|
0.322
|
0.060
|
0.707
|
0.188
|
0.252
|
0.267
|
0.022
|
0.490
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012033
|
1.000
|
1.000
|
Hsc_gene_6539.t1
|
Hsc_gene_6539.t1
|
— |
P91938.2 Thioredoxin reductase 1, mitochondrial [Drosophila melanogaster]
|
KAI1725223.1 pyridine nucleotide-disulfide oxidoreductase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0045454|GO:0050660
|
GO:0008150_0.848|GO:0005575_0.794|GO:0110165_0.783|GO:0003674_0.696|GO:0009987_0.694|GO:0005622_0.673|GO:0016020_0.638|GO:0050896_0.624|GO:0043226_0.618|GO:0043229_0.594|GO:0005737_0.565|GO:0043227_0.565|GO:0042221_0.563|GO:0043231_0.556|GO:0003824_0.530|GO:0051716_0.519
|
IPR004099+597-683+|IPR016156+589-692_599-681+|IPR036188+162-335_336-480+|IPR036249+111-160+|IPR046952+160-487+
|
— |
PF02852+597-683+Pyridine_nucleotide-disulphide_oxidoreductase,_dimerisation_domain
|
— |
PTHR42737+160-487+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
695-695
|
1.000
|
1-694
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
76716.400
|
8.134
|
15.000
|
27.338
|
9.353
|
49.065
|
50.935
|
15.396
|
11.942
|
51.223
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
822.295
|
385.208
|
1425.131
|
1167.683
|
397.179
|
170.792
|
245.716
|
296.929
|
1596.838
|
866.673
|
1179.601
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.657
|
1.463
|
-0.178
|
-1.587
|
-1.204
|
0.536
|
0.694
|
— | — | — | — | — | — |
No JSON data available for plots.