Hg_chrom8_TN10mRNA_15735
Organism: Heterodera glycines Gene Locus: chr8:5663951-5664843 Feature type: polypeptideProtein Sequence
Length: 203
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.573 | 1.375 | 0.896 | 0.34 | 0.821 | 1.768 | 0.704 | 1.97 | 1.314 | 1.265 | 1.12 | 0.58 | 1.642 | 0.663 | 0.603 | 1.337 | 1.211 | 0.746 | 1.137 | 0.724 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14866
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.931
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
30-50
|
0.983
|
15-44
|
1.000
|
— | — |
0.000
|
— | — |
0.294
|
0.249
|
0.016
|
0.731
|
0.098
|
0.341
|
0.223
|
0.029
|
0.163
|
0.546
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012034
|
1.000
|
1.000
|
Hsc_gene_6538.t1
|
Hsc_gene_6538.t1
|
— | — |
KAI6189519.1 CB1 cannabinoid receptor-interacting protein 1 [Aphelenchoides bicaudatus]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR029204+37-201_51-198+
|
— |
PF15043+51-198+CB1_cannabinoid_receptor-interacting_protein_1
|
— |
PTHR31952+37-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-203
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
22934.860
|
7.971
|
5.000
|
24.138
|
13.793
|
53.695
|
46.305
|
14.286
|
9.852
|
47.783
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
780.818
|
460.265
|
469.809
|
611.400
|
308.168
|
194.494
|
160.754
|
579.475
|
672.958
|
1867.226
|
1355.397
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.198
|
0.273
|
0.487
|
-1.019
|
-0.650
|
— |
1.472
|
-1.707
|
— | — | — | — | — |
No JSON data available for plots.