Hg_chrom8_TN10mRNA_15736
Organism: Heterodera glycines Gene Locus: chr8:5666617-5668978 Feature type: polypeptideProtein Sequence
Length: 512
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.204 | 0.863 | 0.568 | 0.943 | 0.618 | 0.601 | 0.767 | 0.391 | 1.259 | 1.531 | 0.592 | 1.494 | 2.821 | 0.789 | 0.877 | 1.423 | 0.8 | 0.917 | 1.502 | 0.574 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14867
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.088
|
0.142
|
0.024
|
0.151
|
0.185
|
0.331
|
0.289
|
0.139
|
0.640
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012035
|
1.000
|
1.000
|
Hsc_gene_6537.t1
|
Hsc_gene_6537.t1
|
— |
Q7ZX53.1 Solute carrier family 22 member 15-like [Xenopus laevis]
|
KAH7727792.1 sugar transporter [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.957|GO:0009987_0.907|GO:0006810_0.798|GO:0051179_0.798|GO:0051234_0.798|GO:0003674_0.790|GO:0005575_0.775|GO:0110165_0.775|GO:0055085_0.750|GO:0016020_0.746|GO:0005215_0.708|GO:0022857_0.708|GO:0071944_0.696|GO:0005886_0.695|GO:0071705_0.514
|
IPR005828+64-505+|IPR020846+53-500+|IPR036259+45-508_51-505+
|
— |
PF00083+64-505+Sugar_(and_other)_transporter
|
— |
PTHR24064+55-505+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
510-512
|
1.000
|
1-509
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
56438.800
|
8.365
|
9.000
|
15.820
|
14.844
|
36.719
|
63.281
|
8.984
|
6.836
|
51.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
1052.020
|
182.986
|
515.364
|
677.436
|
965.625
|
3404.133
|
1817.845
|
1248.935
|
211.991
|
1138.972
|
741.695
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.266
|
1.751
|
0.503
|
0.480
|
1.831
|
-0.896
|
-1.553
|
0.683
|
-2.546
|
1.843
|
— | — | — |
No JSON data available for plots.