Hg_chrom8_TN10mRNA_15738
Organism: Heterodera glycines Gene Locus: chr8:5672391-5673783 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.81 | 0.926 | 0.995 | 0.172 | 1.161 | 1.021 | 0.652 | 1.493 | 1.216 | 1.412 | 1.131 | 1.756 | 1.797 | 0.67 | 0.914 | 0.924 | 0.816 | 1.131 | 0.765 | 0.878 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14869
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.254
|
0.358
|
0.009
|
0.649
|
0.120
|
0.137
|
0.236
|
0.018
|
0.076
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012036
|
1.000
|
1.000
|
Hsc_gene_6535.t1
|
Hsc_gene_6535.t1
|
— |
F1QMV3.1 Trafficking protein particle complex subunit 6b [Danio rerio]
|
KAI1722776.1 transport protein particle (TRAPP) component domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0043087|GO:0048193
|
GO:0005575_0.913|GO:0110165_0.904|GO:0005622_0.850|GO:0005737_0.704|GO:0005829_0.521
|
IPR007194+16-198+|IPR024096+16-200+|IPR037992+16-198_17-199+
|
— |
PF04051+16-198+Transport_protein_particle_(TRAPP)_component
|
— |
PTHR12817+17-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
3kxc_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
22889.350
|
7.063
|
2.000
|
27.363
|
13.433
|
46.766
|
53.234
|
14.925
|
12.438
|
44.776
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
1036.577
|
477.152
|
624.368
|
718.090
|
955.125
|
1084.022
|
885.699
|
1093.200
|
1309.815
|
1363.543
|
1340.517
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.159
|
0.453
|
0.310
|
0.380
|
0.197
|
-0.281
|
— | — | — | — | — | — | — |
No JSON data available for plots.