Hg_chrom8_TN10mRNA_15742
Organism: Heterodera glycines Gene Locus: chr8:5693018-5693840 Feature type: polypeptideProtein Sequence
Length: 194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 1.798 | 0.75 | 0.711 | 1.203 | 0.925 | 0.982 | 1.289 | 0.687 | 0.418 | 0.781 | 0.91 | 0.859 | 1.487 | 1.999 | 0.81 | 0.845 | 1.093 | 1.586 | 0.91 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14873
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
44-64
|
0.996
|
— | — |
0.000
|
— | — |
0.718
|
0.175
|
0.201
|
0.403
|
0.048
|
0.025
|
0.017
|
0.002
|
0.194
|
0.260
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001261
|
4.000
|
1.000
|
Hsc_gene_18153.t1
|
Hsc_gene_5620.t1;Hsc_gene_5620.t2
|
— | — |
KAI3416534.1 hypothetical protein GPALN_006075 [Globodera pallida]
|
KAI9280060
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-68;108-194
|
1.000
|
69-107
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.949
|
21853.370
|
9.653
|
9.500
|
28.866
|
10.825
|
51.031
|
48.969
|
17.526
|
11.340
|
55.670
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
19.508
|
38.938
|
16.068
|
6.794
|
4.929
|
10.100
|
1.316
|
40.833
|
52.101
|
1.656
|
23.275
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.504
|
-2.656
|
-1.139
|
— |
1.046
|
-2.929
|
1.910
|
-4.812
|
— | — | — | — | — |
No JSON data available for plots.