Hg_chrom8_TN10mRNA_15743
Organism: Heterodera glycines Gene Locus: chr8:5698453-5700824 Feature type: polypeptideProtein Sequence
Length: 501
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.114 | 1.125 | 0.344 | 1.164 | 1.126 | 0.927 | 0.599 | 1.863 | 1.025 | 0.726 | 1.879 | 1.053 | 1.036 | 1.263 | 0.627 | 0.949 | 0.998 | 0.307 | 1.174 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14874
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.324
|
0.337
|
0.051
|
0.488
|
0.188
|
0.273
|
0.086
|
0.120
|
0.254
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012040
|
1.000
|
1.000
|
Hsc_gene_6526.t1
|
Hsc_gene_6526.t1
|
— |
Q19626.1 V-type proton ATPase subunit B 1 [Caenorhabditis elegans]
|
KAI3411813.1 putative V-type proton ATPase subunit B [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0033180|GO:0046034|GO:0046961|GO:1902600
|
GO:0005575_0.899|GO:0110165_0.896|GO:0008150_0.868|GO:0005622_0.755|GO:0005737_0.734|GO:0009987_0.713|GO:0016020_0.695|GO:0043226_0.638|GO:0043229_0.616|GO:0065007_0.548|GO:0043227_0.521|GO:0003674_0.507|GO:0071944_0.503
|
IPR000194+157-386+|IPR004100+34-100+|IPR005723+31-494+|IPR020003+377-386+|IPR022879+21-501_26-493_28-495+|IPR027417+104-392+
|
— |
PF00006+157-386+ATP_synthase_alpha/beta_family,_nucleotide-binding_domain|PF02874+34-100+ATP_synthase_alpha/beta_family,_beta-barrel_domain|PF22919+392-491+C-terminal_domain_of_V_and_A_type_ATP_synthase
|
G3DSA:3.40.50.12240:FF:000001+39-498+V-type_proton_ATPase_subunit_B,_brain
|
PTHR43389+26-493+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
498-501
|
1.000
|
1-497
|
9bru_5
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
56027.990
|
5.084
|
-8.000
|
25.349
|
9.381
|
44.711
|
55.289
|
12.176
|
13.174
|
49.102
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
3974.582
|
3192.111
|
4150.652
|
4591.274
|
6434.404
|
5219.808
|
4052.537
|
5677.048
|
2544.694
|
2986.090
|
2796.920
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.151
|
0.387
|
0.253
|
0.455
|
-0.287
|
-0.354
|
— |
-0.343
|
— | — | — | — | — |
No JSON data available for plots.