Hg_chrom8_TN10mRNA_15744
Organism: Heterodera glycines Gene Locus: chr8:5701747-5702249 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.705 | 1.091 | 0.69 | 1.0 | 1.709 | 0.873 | 1.333 | 1.185 | 1.351 | 1.414 | 1.176 | 1.111 | 0.385 | 1.088 | 0.571 | 0.219 | 1.01 | 1.026 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14875
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.421
|
0.350
|
0.014
|
0.516
|
0.051
|
0.150
|
0.089
|
0.009
|
0.321
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012041
|
1.000
|
1.000
|
Hsc_gene_6525.t1
|
Hsc_gene_6525.t1
|
— |
P53355.6 Death-associated protein kinase 1 [Homo sapiens]
|
KAF7639907.1 ANK_REP_REGION domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.786|GO:0005575_0.671|GO:0110165_0.656|GO:0009987_0.627|GO:0005622_0.586|GO:0043226_0.556|GO:0003674_0.530|GO:0016020_0.509|GO:0005737_0.503
|
IPR002110+57-136_83-112_83-115+|IPR036770+44-140_55-138+
|
SM00248+83-112+
|
PF12796+57-136+Ankyrin_repeats_(3_copies)
|
— |
PTHR24183+69-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
17138.620
|
9.065
|
6.000
|
29.333
|
11.333
|
48.667
|
51.333
|
17.333
|
12.000
|
44.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
159.452
|
18.868
|
66.250
|
129.951
|
315.020
|
241.072
|
455.913
|
107.907
|
0.000
|
196.984
|
112.562
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.581
|
2.648
|
1.081
|
1.246
|
-0.372
|
0.930
|
-1.270
|
2.224
|
— |
7.879
|
— | — | — |
No JSON data available for plots.