Hg_chrom8_TN10mRNA_15745
Organism: Heterodera glycines Gene Locus: chr8:5702423-5704811 Feature type: polypeptideProtein Sequence
Length: 532
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 1.005 | 0.854 | 0.389 | 1.003 | 1.06 | 0.85 | 1.316 | 1.17 | 1.219 | 0.968 | 1.99 | 1.305 | 0.904 | 1.419 | 0.752 | 0.955 | 1.111 | 0.868 | 0.885 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14876
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RKTREETKGKKRAKM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.215
|
0.437
|
0.027
|
0.474
|
0.604
|
0.239
|
0.366
|
0.062
|
0.388
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003368
|
2.000
|
1.000
|
Hsc_gene_6524.t1
|
Hsc_gene_6524.t1
|
— |
P49109.2 Flavin-containing monooxygenase 5 [Cavia porcellus]
|
AVA09653.1 putative effector protein [Heterodera avenae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004499|GO:0050660|GO:0050661
|
GO:0008150_0.841|GO:0009987_0.728|GO:0003674_0.721|GO:0008152_0.656|GO:0003824_0.613|GO:0044237_0.611|GO:0005575_0.555|GO:0110165_0.555|GO:0044281_0.506
|
IPR000960+1-17_1-525_25-49_53-71_77-92_142-158_173-187_200-215_298-315_317-344_367-384_384-397+|IPR002253+80-96_208-220_292-305_345-355+|IPR020946+2-513+|IPR036188+1-165_1-228_166-246_269-465_293-490+|IPR050346+2-511+
|
— |
PF00743+2-513+Flavin-binding_monooxygenase-like
|
G3DSA:3.50.50.60:FF:000159+1-395+Dimethylaniline_monooxygenase_[N-oxide-forming]
|
PTHR23023+2-511+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-532
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
60179.370
|
9.718
|
21.000
|
26.692
|
11.466
|
46.241
|
53.759
|
15.977
|
10.714
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
1723.970
|
414.193
|
1889.631
|
2651.698
|
2552.603
|
3627.967
|
2947.633
|
1441.011
|
286.879
|
1505.435
|
983.197
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.962
|
2.542
|
0.597
|
— |
0.522
|
-0.289
|
-1.437
|
1.176
|
-2.486
|
3.300
|
— | — | — |
No JSON data available for plots.