Hg_chrom8_TN10mRNA_15746
Organism: Heterodera glycines Gene Locus: chr8:5706490-5709210 Feature type: polypeptideProtein Sequence
Length: 497
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.608 | 1.404 | 1.207 | 0.694 | 0.771 | 1.083 | 0.91 | 1.308 | 0.984 | 1.278 | 0.61 | 1.42 | 1.956 | 1.006 | 1.068 | 0.92 | 0.891 | 0.884 | 1.238 | 1.124 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14877
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRFFSNVTRNFRRRLQ
|
— | — | — | — |
1-22
|
0.899
|
1.000
|
0.000
|
0.000
|
0.171
|
0.220
|
0.120
|
0.333
|
0.346
|
0.421
|
0.110
|
0.058
|
0.139
|
0.652
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012042
|
1.000
|
1.000
|
Hsc_gene_6523.t1
|
Hsc_gene_6523.t1
|
— |
P52717.1 Serine carboxypeptidase ctsa-1.1 [Caenorhabditis elegans]
|
AIC75882.1 serine carboxypeptidases [Radopholus similis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004185|GO:0006508
|
GO:0005575_0.828|GO:0110165_0.828|GO:0016020_0.688|GO:0005622_0.596|GO:0008150_0.584|GO:0043226_0.581|GO:0043227_0.563|GO:0005737_0.555|GO:0043229_0.547|GO:0043231_0.540|GO:0003674_0.524
|
IPR001563+39-484_47-493_121-133_134-144_168-193_464-477+|IPR018202+182-189+|IPR029058+35-497_45-496+|IPR033124+464-481+
|
— |
PF00450+47-493+Serine_carboxypeptidase
|
G3DSA:3.40.50.1820:FF:000335+36-497+Carboxypeptidase
|
PTHR11802+39-484+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-497
|
4az3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
56393.810
|
6.052
|
-3.500
|
23.139
|
15.091
|
45.272
|
54.728
|
11.871
|
11.268
|
50.503
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
purple
|
3106.966
|
6264.296
|
1429.059
|
6926.797
|
5898.825
|
5661.906
|
3310.018
|
1222.511
|
249.938
|
1887.991
|
1185.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.363
|
— |
2.387
|
-0.263
|
— |
-0.765
|
-2.322
|
1.581
|
— | — | — | — | — |