Hg_chrom8_TN10mRNA_15747
Organism: Heterodera glycines Gene Locus: chr8:5709349-5710964 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 0.909 | 1.066 | 0.449 | 1.249 | 0.752 | 0.776 | 1.303 | 1.52 | 1.365 | 0.592 | 1.916 | 1.448 | 0.877 | 1.263 | 1.163 | 0.587 | 1.086 | 1.002 | 0.958 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14878
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.237
|
0.360
|
0.007
|
0.762
|
0.113
|
0.209
|
0.125
|
0.059
|
0.239
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004768
|
1.000
|
2.000
|
Hsc_gene_6515.t1;Hsc_gene_6522.t1
|
Hsc_gene_6515.t1;Hsc_gene_6522.t1
|
— |
Q6DNF4.1 Soluble guanylate cyclase gcy-36 [Caenorhabditis elegans]
|
KAI1727011.1 heme NO binding associated domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0020037
|
GO:0008150_0.827|GO:0005575_0.747|GO:0110165_0.740|GO:0050896_0.671|GO:0003674_0.654|GO:0005622_0.559|GO:0005488_0.512
|
IPR011644+3-166+|IPR024096+1-173+|IPR038158+1-196+|IPR042463+262-306+
|
— |
PF07700+3-166+Haem-NO-binding
|
G3DSA:3.90.1520.10:FF:000005+1-197+Soluble_guanylate_cyclase_gcy-36
|
PTHR45655+3-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-307
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.496
|
34774.800
|
5.230
|
-6.000
|
26.059
|
12.378
|
44.625
|
55.375
|
12.704
|
13.355
|
46.906
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
24.305
|
55.474
|
98.841
|
24.855
|
11.996
|
6.637
|
14.306
|
25.584
|
1.382
|
16.162
|
9.828
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
-1.295
|
-1.883
|
-1.079
|
— |
1.120
|
1.845
|
-0.695
|
— |
4.497
|
— | — | — |
No JSON data available for plots.