Hg_chrom8_TN10mRNA_15748
Organism: Heterodera glycines Gene Locus: chr8:5716161-5716929 Feature type: polypeptideProtein Sequence
Length: 120
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 0.388 | 1.364 | 0.575 | 1.111 | 0.855 | 0.496 | 2.083 | 0.926 | 0.901 | 1.641 | 1.471 | 1.852 | 0.801 | 1.02 | 0.595 | 0.683 | 1.515 | 1.923 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14879
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.045
|
0.983
|
0.011
|
0.130
|
0.310
|
0.068
|
0.137
|
0.060
|
0.047
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012043
|
1.000
|
1.000
|
Hsc_gene_6529.t1
|
Hsc_gene_6529.t1
|
— |
Q18803.1 Probable ATP synthase subunit g 2, mitochondrial [Caenorhabditis elegans]
|
KAF7630788.1 Asg-1 [Meloidogyne graminicola]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000276|GO:0015078|GO:0015986
|
GO:0005575_0.916|GO:0110165_0.909|GO:0016020_0.817|GO:0005622_0.756|GO:0005737_0.737|GO:0043226_0.719|GO:0043229_0.697|GO:0043227_0.672|GO:0043231_0.662|GO:0032991_0.543
|
IPR006808+7-83_13-85+
|
— |
PF04718+7-83+Mitochondrial_ATP_synthase_g_subunit
|
— |
PTHR12386+13-85+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
117-120
|
1.000
|
1-116
|
8ki3_S
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.516
|
14046.230
|
8.488
|
4.500
|
34.167
|
16.667
|
47.500
|
52.500
|
20.000
|
14.167
|
44.167
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
5180.110
|
1343.656
|
3673.139
|
4505.235
|
6620.167
|
6296.530
|
3613.952
|
4982.397
|
4795.071
|
7428.523
|
6299.901
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.221
|
1.609
|
0.404
|
0.523
|
— |
-0.790
|
-0.444
|
-0.319
|
— | — | — | — | — |
No JSON data available for plots.