Hg_chrom8_TN10mRNA_15750
Organism: Heterodera glycines Gene Locus: chr8:5718746-5725296 Feature type: polypeptideProtein Sequence
Length: 785
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 0.681 | 0.764 | 0.703 | 0.955 | 1.241 | 0.516 | 1.146 | 1.076 | 1.274 | 0.791 | 1.349 | 1.168 | 1.249 | 1.274 | 1.711 | 0.982 | 0.83 | 1.568 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14881
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
GSKSKRRPSRLRKAS,RKTMEGKWKRTKEQKEKHK,RKASPSDLEGGQRTKDERR
|
32-100
|
0.773
|
26-115
|
0.982
|
— | — |
0.000
|
— | — |
0.066
|
0.059
|
0.028
|
0.158
|
0.290
|
0.277
|
0.234
|
0.015
|
0.670
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004769
|
1.000
|
2.000
|
Hsc_gene_6531.t1;Hsc_gene_6531.t2
|
Hsc_gene_6531.t1;Hsc_gene_6531.t2
|
— |
Q09453.2 Glycine receptor subunit beta-type 4 [Caenorhabditis elegans]
|
KAI1723594.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.953|GO:0009987_0.934|GO:0005575_0.889|GO:0110165_0.888|GO:0016020_0.830|GO:0065007_0.812|GO:0051179_0.793|GO:0050789_0.792|GO:0006810_0.784|GO:0051234_0.784|GO:0071944_0.769|GO:0005886_0.761|GO:0003674_0.746|GO:0023052_0.725|GO:0007154_0.720|GO:0006811_0.682|GO:0050794_0.680|GO:0030054_0.673|GO:0055085_0.669|GO:0032501_0.660|GO:0034220_0.653|GO:0005215_0.648|GO:0005216_0.648|GO:0015075_0.648|GO:0015267_0.648|GO:0022803_0.648|GO:0022857_0.648|GO:0007267_0.645|GO:0050896_0.629|GO:0007268_0.616|GO:0045202_0.616|GO:0098916_0.616|GO:0099536_0.616|GO:0099537_0.616|GO:0022836_0.606|GO:0051716_0.597|GO:0015276_0.556|GO:0022834_0.556|GO:0007165_0.537|GO:0098660_0.529|GO:0065008_0.525|GO:0003008_0.515|GO:0043226_0.514|GO:0098590_0.508
|
IPR006028+314-334_340-361_374-395_760-780+|IPR006029+318-505+|IPR006201+124-492_152-168_184-195_230-244_305-317+|IPR006202+114-281+|IPR018000+230-244+|IPR036719+313-783+|IPR036734+105-308_116-310+|IPR038050+309-473+
|
— |
PF02931+114-281+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+318-505+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:2.70.170.10:FF:000039+101-308+Ligand-Gated_ion_Channel
|
PTHR18945+124-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
459-587;689-744
|
3.000
|
1-458;588-688;745-785
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
88120.520
|
8.726
|
21.000
|
23.694
|
10.955
|
49.427
|
50.573
|
13.758
|
9.936
|
50.446
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
384.866
|
379.265
|
1413.188
|
620.697
|
189.229
|
287.391
|
168.149
|
547.406
|
57.036
|
289.014
|
189.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.668
|
0.574
|
-1.078
|
-1.744
|
0.616
|
-0.762
|
0.826
|
-1.560
|
— | — | — | — | — |
No JSON data available for plots.