Hg_chrom8_TN10mRNA_15752
Organism: Heterodera glycines Gene Locus: chr8:5731844-5733805 Feature type: polypeptideProtein Sequence
Length: 456
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 0.969 | 0.917 | 0.756 | 0.841 | 1.293 | 0.679 | 2.741 | 0.731 | 0.919 | 0.665 | 1.419 | 1.157 | 0.97 | 1.029 | 1.41 | 1.366 | 0.93 | 1.35 | 0.322 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14883
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.515
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
KKPR,LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.116
|
0.033
|
0.013
|
0.148
|
0.556
|
0.650
|
0.266
|
0.022
|
0.464
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004763
|
2.000
|
1.000
|
Hsc_gene_6569.t1
|
Hsc_gene_6569.t1
|
— | — |
RCN34947.1 Ctr copper transporter family protein, partial [Ancylostoma caninum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005375|GO:0016020|GO:0035434
|
— |
IPR007274+54-113_57-137+
|
— |
PF04145+57-137+Ctr_copper_transporter_family
|
— |
PTHR12483+54-113+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;181-407
|
2.000
|
21-180;408-456
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
50283.280
|
7.239
|
9.500
|
25.000
|
12.500
|
52.412
|
47.588
|
14.912
|
10.088
|
55.482
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
441.314
|
542.414
|
616.634
|
402.812
|
446.551
|
605.675
|
511.875
|
476.145
|
352.207
|
315.802
|
331.404
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.567
|
-0.506
|
— |
0.455
|
-0.233
|
-0.451
|
0.246
|
— | — | — | — | — |
No JSON data available for plots.