Hg_chrom8_TN10mRNA_15754
Organism: Heterodera glycines Gene Locus: chr8:5746088-5748722 Feature type: polypeptideProtein Sequence
Length: 556
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.213 | 0.687 | 0.496 | 0.749 | 1.568 | 1.049 | 1.529 | 0.839 | 1.361 | 0.763 | 0.846 | 0.699 | 1.072 | 0.844 | 2.364 | 0.914 | 0.654 | 0.277 | 0.264 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14885
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.751
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— |
RYRKRKK,RRQTILERNKAAAVRYRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.913
|
0.123
|
0.007
|
0.349
|
0.038
|
0.030
|
0.053
|
0.006
|
0.075
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012045
|
1.000
|
1.000
|
Hsc_gene_6512.t1
|
Hsc_gene_6512.t1
|
— |
Q86MD3.1 Transcription factor atf-7 [Caenorhabditis elegans]
|
KAF7634359.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355
|
GO:0008150_0.954|GO:0005575_0.946|GO:0110165_0.943|GO:0065007_0.932|GO:0050789_0.927|GO:0009987_0.916|GO:0050794_0.916|GO:0005622_0.896|GO:0016020_0.882|GO:0043226_0.871|GO:0003674_0.858|GO:0005488_0.858|GO:0043229_0.858|GO:0008152_0.845|GO:0019222_0.845|GO:0031323_0.840|GO:0044237_0.840|GO:0048518_0.836|GO:0044238_0.832|GO:0080090_0.832|GO:0043170_0.831|GO:0060255_0.831|GO:0048522_0.826|GO:0009058_0.823|GO:0009889_0.823|GO:0031326_0.823|GO:0044249_0.823|GO:0009059_0.821|GO:0010467_0.821|GO:0050896_0.816|GO:0006139_0.814|GO:0016070_0.814|GO:0090304_0.814|GO:0010468_0.813|GO:0010556_0.813|GO:0043227_0.813|GO:0019219_0.809|GO:0051252_0.809|GO:0032774_0.805|GO:0034654_0.805|GO:0141187_0.805|GO:0009893_0.802|GO:0006351_0.798|GO:2001141_0.791|GO:0006355_0.790|GO:0043231_0.789|GO:0010604_0.787|GO:0031325_0.787|GO:0051716_0.785|GO:0003676_0.784|GO:0097159_0.784|GO:0009891_0.781|GO:0031328_0.779|GO:0010557_0.770|GO:0045935_0.765|GO:0051254_0.765|GO:0005634_0.752|GO:0006366_0.751|GO:0045893_0.747|GO:1902680_0.747|GO:0003677_0.742|GO:0043565_0.742|GO:0003690_0.735|GO:1990837_0.735|GO:0042221_0.726|GO:0001067_0.721|GO:0000976_0.719|GO:0070887_0.693|GO:0006357_0.652|GO:0043228_0.644|GO:0043232_0.640|GO:0045944_0.624|GO:0000977_0.598|GO:1901700_0.597|GO:0005515_0.593|GO:0000987_0.589|GO:0000978_0.581|GO:1901701_0.579|GO:0006950_0.529|GO:0005694_0.519|GO:0000785_0.514|GO:0009605_0.503|GO:0033554_0.501
|
IPR004827+439-503_441-504+|IPR046347+443-500+|IPR051027+24-528+
|
SM00338+439-503+
|
— | — |
PTHR19304+24-528+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
199-556
|
1.000
|
1-198
|
2wt7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
58709.300
|
8.499
|
13.500
|
20.504
|
6.835
|
53.957
|
46.043
|
12.230
|
8.273
|
58.094
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1000.360
|
1193.665
|
1541.662
|
1016.298
|
668.812
|
624.048
|
1118.914
|
1412.955
|
1398.183
|
486.803
|
877.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.140
|
-0.369
|
-0.493
|
-0.635
|
— |
0.853
|
1.081
|
— | — | — | — | — | — |
No JSON data available for plots.