Hg_chrom8_TN10mRNA_15755
Organism: Heterodera glycines Gene Locus: chr8:5749099-5749519 Feature type: polypeptideProtein Sequence
Length: 82
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.418 | 0.284 | 1.552 | 0.421 | 2.439 | 0.313 | 0.726 | 1.829 | 0.813 | 0.824 | 0.739 | 3.587 | 1.016 | 0.235 | 0.996 | 0.697 | 0.4 | 0.924 | 1.876 | 1.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14886
|
— | — |
2.111
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.527
|
0.479
|
0.352
|
0.542
|
0.203
|
0.184
|
0.091
|
0.101
|
0.144
|
0.214
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004770
|
1.000
|
2.000
|
Hsc_gene_7188.t1;Hsc_gene_7191.t1
|
Hsc_gene_15475.t1;Hsc_gene_20119.t1;Hsc_gene_6508.t1;Hsc_gene_7188.t1;Hsc_gene_7191.t1
|
C44B11.3
|
P02553.1 Tubulin alpha chain [Lytechinus pictus]
|
XP_023255122.1 tubulin alpha chain-like, partial [Seriola lalandi dorsalis]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005200|GO:0005525|GO:0005874|GO:0007017
|
GO:0005575_0.870|GO:0110165_0.860|GO:0005622_0.718|GO:0008150_0.673|GO:0043226_0.599|GO:0009987_0.579|GO:0043229_0.564|GO:0016020_0.554|GO:0005737_0.511
|
IPR000217+9-78+|IPR002452+23-39_60-76+|IPR008280+2-73+|IPR023123+22-74+
|
— | — |
G3DSA:1.10.287.600:FF:000005+22-82+Tubulin_alpha_chain
|
PTHR11588+9-78+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
82-82
|
1.000
|
1-81
|
1z2b_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
9434.510
|
4.185
|
-9.500
|
36.585
|
14.634
|
46.341
|
53.659
|
13.415
|
23.171
|
43.902
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
salmon
|
28.171
|
10.359
|
11.955
|
2.890
|
2.147
|
4.893
|
11.053
|
25.724
|
2.073
|
95.811
|
55.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.979
|
-1.948
|
— | — |
1.187
|
2.292
|
-1.076
|
-5.709
|
— |
-5.383
|
— | — |
No JSON data available for plots.