SCN Proteipedia

Hg_chrom8_TN10mRNA_15759

Organism: Heterodera glycines Gene Locus: chr8:5790933-5797922 Feature type: polypeptide

Protein Sequence

Length: 1,466

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.031	1.174	0.62	1.106	0.932	1.469	0.528	1.739	0.894	1.65	0.527	0.963	1.686	1.063	1.35	0.916	0.827	0.806	1.364	0.622	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14890	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.533

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	26-50	0.924	—	—	—	—	0.000	—	—	0.483	0.265	0.020	0.517	0.120	0.201	0.085	0.146	0.109	0.072

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001428	3.000	2.000	Hsc_gene_13168.t1;Hsc_gene_13168.t2	Hsc_gene_13169.t1;Hsc_gene_13169.t2	—	—	KAI1728602.1 ectopic P granules protein 5 [Ditylenchus destructor]	No	-0.180

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.967\|GO:0009987_0.923\|GO:0005575_0.908\|GO:0110165_0.902\|GO:0003674_0.894\|GO:0065007_0.881\|GO:0050789_0.869\|GO:0050794_0.846\|GO:0005622_0.798\|GO:0008152_0.797\|GO:0044237_0.765\|GO:0016043_0.755\|GO:0071840_0.755\|GO:0048519_0.746\|GO:0003824_0.739\|GO:0019222_0.736\|GO:0048523_0.733\|GO:0031323_0.728\|GO:0005737_0.727\|GO:0006996_0.700\|GO:0016740_0.698\|GO:0009056_0.697\|GO:0051128_0.693\|GO:0140096_0.691\|GO:0009892_0.690\|GO:0044085_0.689\|GO:0016787_0.686\|GO:0009894_0.685\|GO:0022607_0.685\|GO:0031324_0.685\|GO:0044248_0.682\|GO:0044087_0.678\|GO:0033043_0.676\|GO:0051129_0.676\|GO:0006914_0.675\|GO:0061919_0.675\|GO:0070925_0.675\|GO:0000045_0.670\|GO:0007033_0.670\|GO:0008641_0.670\|GO:0009895_0.670\|GO:0010506_0.670\|GO:0010507_0.670\|GO:0010639_0.670\|GO:0016236_0.670\|GO:0016241_0.670\|GO:0016242_0.670\|GO:0016462_0.670\|GO:0016746_0.670\|GO:0016755_0.670\|GO:0016817_0.670\|GO:0016818_0.670\|GO:0016874_0.670\|GO:0016877_0.670\|GO:0016887_0.670\|GO:0017111_0.670\|GO:0019777_0.670\|GO:0019778_0.670\|GO:0019786_0.670\|GO:0019787_0.670\|GO:0031329_0.670\|GO:0031330_0.670\|GO:0044088_0.670\|GO:0061650_0.670\|GO:0061651_0.670\|GO:0061659_0.670\|GO:0061660_0.670\|GO:0140657_0.670\|GO:1902115_0.670\|GO:1902116_0.670\|GO:1902902_0.670\|GO:1905037_0.670\|GO:2000785_0.670	IPR051436+10-164+	—	—	—	PTHR31139+10-164+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1466	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.736	166389.180	8.199	41.500	22.578	13.438	44.816	55.184	13.574	9.004	47.271

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	540.312	1475.374	586.597	606.479	558.180	457.837	744.252	448.864	81.607	473.565	305.583

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.559	-1.420	—	-0.151	-0.272	0.711	—	0.871	—	—	—	—	—

No JSON data available for plots.

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