SCN Proteipedia

Hg_chrom8_TN10mRNA_15760

Organism: Heterodera glycines Gene Locus: chr8:5799342-5802466 Feature type: polypeptide

Protein Sequence

Length: 450

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.749	0.879	1.01	0.92	1.259	0.912	0.82	1.778	1.333	0.901	0.64	1.83	1.358	0.855	1.043	0.984	0.984	1.178	0.684	1.176	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14891	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.456	0.264	0.058	0.686	0.118	0.162	0.128	0.027	0.154	0.100

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000899	4.000	2.000	Hsc_gene_20119.t1;Hsc_gene_6508.t1	Hsc_gene_6508.t1;Hsc_gene_7188.t1;Hsc_gene_7191.t1	—	P36220.1 Tubulin alpha chain [Torpedo marmorata]	XP_020301341.1 tubulin alpha chain [Loa loa];EFO16180.2 tubulin alpha chain [Loa loa]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017	GO:0005575_0.871\|GO:0110165_0.866\|GO:0005622_0.756\|GO:0008150_0.672\|GO:0043226_0.647\|GO:0016020_0.600\|GO:0043229_0.596\|GO:0009987_0.588\|GO:0005737_0.512	IPR000217+7-446_16-36_59-78_101-112_114-138_140-158_159-180_184-197_198-218_386-414+\|IPR002452+24-39_51-64_94-107_126-134_154-166_167-178_220-232_280-295_327-348_353-366_366-385_391-407_428-444+\|IPR003008+9-219_55-252+\|IPR008280+252-441+\|IPR017975+148-154+\|IPR018316+254-399_269-398+\|IPR023123+390-442+\|IPR036525+7-250_7-274+\|IPR037103+275-389+	SM00864+55-252+\|SM00865+254-399+	PF00091+9-219+Tubulin/FtsZ_family,_GTPase_domain\|PF03953+269-398+Tubulin_C-terminal_domain	G3DSA:1.10.287.600:FF:000005+390-450+Tubulin_alpha_chain\|G3DSA:3.30.1330.20:FF:000001+275-389+Tubulin_alpha_chain\|G3DSA:3.40.50.1440:FF:000019+7-274+Tubulin_alpha_chain	PTHR11588+7-446+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	450-450	1.000	1-449	1z2b_C	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.577	50612.380	5.427	-9.000	26.000	13.333	46.222	53.778	12.889	13.111	50.444

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	429.853	1868.797	991.923	222.252	69.205	83.639	158.874	575.175	180.244	256.726	223.948

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.144	-3.209	-2.048	-1.716	—	0.936	2.681	-1.714	—	—	—	—	—

No JSON data available for plots.

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