Hg_chrom8_TN10mRNA_15761
Organism: Heterodera glycines Gene Locus: chr8:5802634-5811563 Feature type: polypeptideProtein Sequence
Length: 2,172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 0.932 | 1.097 | 0.524 | 1.335 | 1.181 | 0.559 | 1.335 | 1.238 | 1.549 | 1.018 | 1.517 | 1.01 | 0.868 | 1.24 | 0.809 | 0.845 | 1.018 | 0.744 | 1.016 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14892
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRKH,KKCVLPDGSQRTQKK,RRTVAPAEKKAAKTKSRDR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.848
|
0.060
|
0.009
|
0.287
|
0.045
|
0.068
|
0.046
|
0.004
|
0.073
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004771
|
2.000
|
1.000
|
Hsc_gene_6507.t1
|
Hsc_gene_6507.t1
|
— |
Q9U2G0.1 U5 small nuclear ribonucleoprotein 200 kDa helicase [Caenorhabditis elegans]
|
KAI1728229.1 sec63 brl domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0005524
|
GO:0005575_0.818|GO:0110165_0.818|GO:0008150_0.801|GO:0005622_0.789|GO:0009987_0.756|GO:0043226_0.635|GO:0008152_0.626|GO:0043229_0.617|GO:0016020_0.614|GO:0044238_0.608|GO:0043170_0.594|GO:0043227_0.563|GO:0016043_0.546|GO:0044237_0.546|GO:0071840_0.546|GO:0009058_0.543|GO:0043231_0.533|GO:0009059_0.521|GO:0044249_0.521|GO:0003674_0.515|GO:0006139_0.515|GO:0090304_0.506
|
IPR001650+681-918_765-857_766-856+|IPR004179+976-1281_977-1280_1813-2145_1814-2142+|IPR011545+480-658_1325-1491+|IPR014001+474-685_487-671_1320-1522_1333-1509+|IPR014756+2030-2149+|IPR027417+419-664_465-678_673-885_679-880_1208-1504_1285-1512_1508-1724_1513-1723+|IPR035892+1176-1284_2015-2150+|IPR036388+885-982_1724-1820+|IPR036390+885-987_1724-1824+|IPR041094+256-361+|IPR048863+103-170+|IPR050474+224-1193+
|
SM00487+474-685_1320-1522+|SM00490+765-857+|SM00973+976-1281_1813-2145+
|
PF00270+480-658_1325-1491+DEAD/DEAH_box_helicase|PF00271+766-856+Helicase_conserved_C-terminal_domain|PF02889+977-1280_1814-2142+Sec63_Brl_domain|PF18149+256-361+N-terminal_helicase_PWI_domain|PF21188+103-170+Pre-mRNA-splicing_helicase_BRR2_plug_domain
|
G3DSA:1.10.10.10:FF:000012+1726-1820+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:1.10.10.10:FF:000024+887-976+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:1.10.150.20:FF:000004+1119-1174+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:1.10.150.20:FF:000013+1958-2014+U5_small_nuclear_ribonucleoprotein_kDa_helicase|G3DSA:1.10.3380.10:FF:000001+977-1118+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:1.10.3380.10:FF:000002+1820-1955+Activating_signal_cointegrator_1_complex_subunit_3|G3DSA:2.60.40.150:FF:000004+1176-1284+RNA_helicase,_activating_signal_cointegrator_1|G3DSA:3.40.50.300:FF:000062+679-880+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:3.40.50.300:FF:000254+1285-1513+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:3.40.50.300:FF:000368+1514-1725+U5_small_nuclear_ribonucleoprotein_200_kDa_helicase|G3DSA:3.40.50.300:FF:003287+451-678+U5_small_nuclear_ribonucleoprotein_200_kDa_helicase
|
PTHR47961+224-1193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32;2146-2172
|
1.000
|
33-2145
|
2q0z_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
248993.790
|
6.570
|
2.000
|
29.512
|
10.727
|
48.941
|
51.059
|
15.470
|
14.042
|
44.245
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
4708.651
|
6097.000
|
5645.846
|
5426.357
|
6428.897
|
5644.326
|
6081.371
|
3755.372
|
4666.622
|
2445.691
|
3397.519
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.340
|
-0.305
|
— |
0.213
|
— | — |
-0.693
|
0.838
|
— | — | — | — | — |
No JSON data available for plots.