Hg_chrom8_TN10mRNA_15768
Organism: Heterodera glycines Gene Locus: chr8:5833425-5839831 Feature type: polypeptideProtein Sequence
Length: 1,594
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.08 | 0.855 | 0.627 | 1.244 | 1.625 | 0.538 | 1.506 | 1.004 | 0.814 | 1.036 | 1.587 | 0.906 | 1.351 | 1.178 | 1.604 | 1.039 | 0.561 | 0.434 | 0.867 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14899
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKR,RKRRK,PIMKRRM,KRENVAVRKSAQLVRRAFK,RRARGSSMMGKCVVSKPKK,RRMEADESLTNSASSKRQR,KEKPNSEKSTSKRAKEKPPKGIS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.944
|
0.052
|
0.025
|
0.299
|
0.031
|
0.019
|
0.029
|
0.038
|
0.038
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004772
|
1.000
|
2.000
|
Hsc_gene_6500.t1;Hsc_gene_6500.t2
|
Hsc_gene_6500.t1;Hsc_gene_6500.t2
|
— |
Q8WML3.1 Histone acetyltransferase KAT6B [Macaca fascicularis]
|
KAI3411831.1 Histone acetyltransferase kat6b [Globodera pallida]
|
No
|
-0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004402|GO:0006355
|
GO:0008150_0.976|GO:0009987_0.944|GO:0065007_0.843|GO:0050789_0.829|GO:0005575_0.825|GO:0110165_0.825|GO:0003674_0.793|GO:0050794_0.765|GO:0005622_0.752|GO:0043226_0.726|GO:0008152_0.719|GO:0043170_0.719|GO:0043229_0.704|GO:0016020_0.695|GO:0019222_0.694|GO:0016043_0.691|GO:0071840_0.691|GO:0009058_0.662|GO:0031323_0.662|GO:0044237_0.662|GO:0009889_0.654|GO:0060255_0.641|GO:0009059_0.637|GO:0044249_0.637|GO:0010467_0.629|GO:0031326_0.627|GO:0010468_0.625|GO:0010556_0.625|GO:0043227_0.591|GO:0003824_0.575|GO:0140096_0.575|GO:0006325_0.571|GO:0006338_0.571|GO:0043231_0.566|GO:0016740_0.556|GO:0032502_0.553|GO:0016746_0.550|GO:0140993_0.545|GO:0004402_0.538|GO:0008080_0.538|GO:0016407_0.538|GO:0016410_0.538|GO:0016747_0.538|GO:0034212_0.538|GO:0061733_0.538|GO:0048518_0.530|GO:0048856_0.528|GO:0044238_0.524|GO:0005488_0.518|GO:0005634_0.516|GO:0048522_0.513|GO:0050896_0.513|GO:0006139_0.502
|
IPR002717+362-640_420-603+|IPR016181+369-638+|IPR036388+538-628+|IPR040706+369-407+|IPR050603+52-649+
|
— |
PF01853+420-603+MOZ/SAS_family|PF17772+369-407+MYST_family_zinc_finger_domain
|
G3DSA:3.40.630.30:FF:000001+418-546+Histone_acetyltransferase
|
PTHR10615+52-649+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-268;666-1446;1580-1594
|
2.000
|
269-665;1447-1579
|
2ozu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
179059.260
|
8.013
|
31.000
|
27.792
|
9.787
|
56.336
|
43.664
|
15.621
|
12.171
|
50.565
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
paleturquoise
|
1789.301
|
2814.188
|
1356.432
|
1225.215
|
1261.526
|
1341.088
|
2771.293
|
977.638
|
2523.537
|
1530.271
|
1955.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.283
|
-1.337
|
— | — | — |
1.057
|
-0.560
|
1.644
|
— | — | — | — | — |
No JSON data available for plots.