Hg_chrom8_TN10mRNA_15770
Organism: Heterodera glycines Gene Locus: chr8:5840961-5842502 Feature type: polypeptideProtein Sequence
Length: 381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 0.794 | 0.668 | 0.634 | 1.356 | 1.077 | 0.531 | 1.706 | 1.458 | 1.632 | 0.835 | 1.235 | 1.021 | 1.211 | 0.75 | 0.862 | 1.076 | 1.113 | 0.606 | 0.54 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14901
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.721
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.590
|
0.225
|
0.004
|
0.621
|
0.225
|
0.131
|
0.284
|
0.001
|
0.097
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012053
|
1.000
|
1.000
|
Hsc_gene_6498.t1
|
Hsc_gene_6498.t1
|
— |
Q12905.2 Interleukin enhancer-binding factor 2 [Homo sapiens]
|
KAI3411833.1 Interleukin enhancer-binding factor 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.837|GO:0110165_0.837|GO:0005622_0.762|GO:0016020_0.706|GO:0008150_0.685|GO:0043226_0.665|GO:0043229_0.664|GO:0009987_0.626|GO:0043227_0.611|GO:0043231_0.598|GO:0003674_0.539
|
IPR006561+18-368_92-325+|IPR043519+55-143_59-211+|IPR049401+24-210+|IPR049402+214-344+|IPR052134+23-370+
|
SM00572+92-325+
|
PF07528+24-210+DZF_N-terminal_domain|PF20965+214-344+DZF_C-terminal_domain
|
G3DSA:3.30.460.10:FF:000058+59-211+Interleukin_enhancer-binding_factor_2
|
PTHR46447+23-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;353-381
|
1.000
|
5-352
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
42274.910
|
6.047
|
-3.500
|
24.409
|
9.711
|
44.619
|
55.381
|
12.598
|
11.811
|
48.031
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
1168.471
|
900.153
|
986.566
|
1544.534
|
1818.959
|
1207.221
|
1737.919
|
943.074
|
518.105
|
1296.574
|
962.944
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.642
|
0.754
|
0.204
|
-0.577
|
0.536
|
-0.459
|
1.024
|
— | — | — | — | — |
No JSON data available for plots.