Hg_chrom8_TN10mRNA_15771
Organism: Heterodera glycines Gene Locus: chr8:5842625-5843557 Feature type: polypeptideProtein Sequence
Length: 173
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.546 | 0.941 | 0.315 | 0.997 | 1.06 | 0.741 | 0.826 | 1.734 | 1.156 | 1.094 | 0.613 | 3.06 | 0.803 | 0.889 | 1.416 | 0.826 | 0.569 | 1.314 | 0.445 | 0.85 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14902
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.636
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
33-59
|
0.978
|
38-66
|
0.997
|
— | — |
0.000
|
— | — |
0.523
|
0.364
|
0.057
|
0.629
|
0.113
|
0.226
|
0.085
|
0.183
|
0.136
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012054
|
1.000
|
1.000
|
Hsc_gene_6497.t1
|
Hsc_gene_6497.t1
|
— |
A7RX26.1 Probable imidazolonepropionase [Nematostella vectensis]
|
KAH7724210.1 Protein T12A2.1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737|GO:0016810|GO:0016812|GO:0019556
|
GO:0003674_0.861|GO:0003824_0.746|GO:0016787_0.683|GO:0016810_0.658|GO:0005575_0.637|GO:0110165_0.631|GO:0016812_0.564|GO:0005622_0.533|GO:0005737_0.509
|
IPR005920+6-168+|IPR011059+103-169_125-153+|IPR013108+60-167+|IPR032466+23-124+
|
— |
PF07969+60-167+Amidohydrolase_family
|
— |
PTHR42752+6-168+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-173
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
18915.090
|
8.930
|
8.000
|
22.543
|
9.827
|
38.728
|
61.272
|
14.451
|
8.092
|
51.445
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
255.789
|
72.051
|
302.326
|
267.444
|
442.002
|
397.817
|
230.022
|
190.535
|
53.067
|
365.952
|
231.858
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.839
|
1.755
|
— |
0.693
|
— |
-0.782
|
-1.169
|
0.413
|
-2.915
|
— | — | — | — |
No JSON data available for plots.