Hg_chrom8_TN10mRNA_15772
Organism: Heterodera glycines Gene Locus: chr8:5843851-5845220 Feature type: polypeptideProtein Sequence
Length: 392
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 0.89 | 0.232 | 0.44 | 0.17 | 5.233 | 1.518 | 0.765 | 0.624 | 0.689 | 0.232 | 0.15 | 0.567 | 1.472 | 0.521 | 1.421 | 1.255 | 0.502 | 0.392 | 2.626 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14903
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RKKK
|
— | — | — | — |
1-27
|
0.998
|
1.000
|
0.000
|
0.000
|
0.336
|
0.150
|
0.030
|
0.235
|
0.149
|
0.026
|
0.042
|
0.042
|
0.062
|
0.884
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012055
|
1.000
|
1.000
|
Hsc_gene_6496.t1
|
— | — | — |
KAI3411836.1 hypothetical protein GPALN_001899 [Globodera pallida]
|
No
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-322;386-392
|
1.000
|
323-385
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.975
|
42689.280
|
8.945
|
10.000
|
7.908
|
13.010
|
49.745
|
50.255
|
5.612
|
2.296
|
53.316
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
596.954
|
386.173
|
17.391
|
17.780
|
1631.931
|
3930.422
|
116.377
|
636.684
|
50.785
|
47.299
|
48.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.706
|
-4.579
|
— |
6.489
|
1.285
|
-5.069
|
-2.743
|
-2.305
|
— | — |
5.687
|
— | — |