Hg_chrom8_TN10mRNA_15773
Organism: Heterodera glycines Gene Locus: chr8:5845337-5846607 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.999 | 0.48 | 0.937 | 0.592 | 1.89 | 0.881 | 1.145 | 1.546 | 1.833 | 1.347 | 0.781 | 1.617 | 1.145 | 0.397 | 1.122 | 0.638 | 1.014 | 0.885 | 0.0 | 0.202 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14904
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.851
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.436
|
0.358
|
0.110
|
0.783
|
0.181
|
0.099
|
0.162
|
0.180
|
0.054
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012056
|
1.000
|
1.000
|
Hsc_gene_6495.t1
|
Hsc_gene_6495.t1
|
— |
Q96NU7.2 Probable imidazolonepropionase [Homo sapiens]
|
KAH7724210.1 Protein T12A2.1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737|GO:0016812|GO:0019556
|
GO:0003674_0.856|GO:0003824_0.767|GO:0005575_0.707|GO:0110165_0.702|GO:0016787_0.689|GO:0016810_0.658|GO:0005622_0.654|GO:0016812_0.650|GO:0005737_0.630
|
IPR005920+5-289+|IPR032466+87-286+
|
— | — | — |
PTHR42752+5-289+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-291
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
31876.410
|
4.737
|
-12.500
|
30.241
|
7.904
|
46.392
|
53.608
|
13.746
|
16.495
|
45.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
violet
|
444.203
|
119.912
|
587.228
|
467.050
|
724.524
|
465.977
|
572.253
|
363.417
|
544.259
|
297.557
|
403.286
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.062
|
1.824
|
-0.222
|
0.602
|
-0.622
|
0.308
|
-0.467
|
0.801
|
— | — | — | — | — |
No JSON data available for plots.