Hg_chrom8_TN10mRNA_15775
Organism: Heterodera glycines Gene Locus: chr8:5850108-5852310 Feature type: polypeptideProtein Sequence
Length: 421
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.608 | 1.215 | 0.777 | 0.901 | 0.554 | 0.974 | 0.792 | 0.831 | 1.108 | 1.348 | 0.576 | 1.677 | 2.045 | 0.411 | 1.212 | 1.188 | 1.168 | 1.152 | 1.279 | 1.607 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14906
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.029
|
0.117
|
0.018
|
0.090
|
0.406
|
0.277
|
0.192
|
0.009
|
0.525
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012058
|
1.000
|
1.000
|
Hsc_gene_6492.t1
|
Hsc_gene_6492.t1
|
— |
O01393.1 Innexin unc-9 [Caenorhabditis elegans]
|
KAI3415905.1 Innexin inx3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.854|GO:0110165_0.854|GO:0008150_0.846|GO:0009987_0.703|GO:0030054_0.563|GO:0016020_0.528|GO:0003674_0.512|GO:0005911_0.511|GO:0070161_0.511
|
IPR000990+8-417_15-421_20-414_43-54_96-118_179-193_256-272+
|
— |
PF00876+20-414+Innexin
|
— |
PTHR11893+8-417+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-421
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
48118.330
|
8.741
|
12.500
|
19.002
|
16.152
|
43.468
|
56.532
|
11.401
|
7.601
|
49.169
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
698.841
|
116.340
|
243.298
|
245.525
|
627.152
|
433.500
|
1905.392
|
122.714
|
11.377
|
1663.678
|
955.549
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
0.940
|
— |
1.322
|
-0.520
|
2.146
|
-1.930
|
4.100
|
-7.355
|
4.652
|
— | — | — |
No JSON data available for plots.