Hg_chrom8_TN10mRNA_15777
Organism: Heterodera glycines Gene Locus: chr8:5856548-5858642 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.883 | 0.687 | 0.422 | 0.655 | 0.738 | 0.974 | 1.105 | 0.738 | 2.297 | 1.568 | 0.639 | 1.986 | 1.758 | 0.73 | 0.732 | 0.964 | 0.795 | 1.023 | 0.811 | 1.055 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14908
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.100
|
0.118
|
0.024
|
0.078
|
0.533
|
0.318
|
0.249
|
0.004
|
0.459
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012060
|
1.000
|
1.000
|
Hsc_gene_6490.t1
|
Hsc_gene_6490.t1
|
Y57G11C.15a;Y57G11C.15b
|
Q2KHX4.3 Protein transport protein Sec61 subunit alpha isoform 2 [Bos taurus]
|
KAH7729708.1 Sec61 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015031|GO:0016020
|
GO:0008150_0.874|GO:0005575_0.666|GO:0110165_0.662|GO:0016020_0.624|GO:0009987_0.603|GO:0071944_0.561|GO:0005886_0.555|GO:0051179_0.553|GO:0051234_0.551
|
IPR002208+6-468_18-466_29-464_75-456+|IPR019561+40-74+|IPR023201+7-469_8-462+|IPR030659+75-94_164-182+
|
— |
PF00344+75-456+SecY|PF10559+40-74+Plug_domain_of_Sec61p
|
G3DSA:1.10.3370.10:FF:000002+7-469+Transport_Sec61_subunit_alpha_isoform_2
|
PTHR10906+18-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-474
|
9ygy_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
52095.530
|
8.369
|
8.500
|
16.034
|
12.447
|
34.388
|
65.612
|
9.283
|
6.751
|
46.203
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
5286.258
|
2366.246
|
3398.578
|
5743.755
|
8562.734
|
11976.029
|
5117.529
|
5026.721
|
6102.530
|
2728.633
|
4174.589
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.295
|
1.142
|
0.864
|
0.544
|
0.500
|
-1.217
|
-1.351
|
— | — | — |
1.786
|
— | — |
No JSON data available for plots.