SCN Proteipedia

Hg_chrom8_TN10mRNA_15778

Organism: Heterodera glycines Gene Locus: chr8:5859159-5875567 Feature type: polypeptide

Protein Sequence

Length: 4,203

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.062	0.813	0.8	1.206	1.146	1.226	0.923	1.428	0.804	1.354	0.548	1.036	1.276	0.911	1.471	1.213	0.811	0.89	1.062	0.28	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14909	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KRRK,RRKR,RRRR,PNEKRNR	—	—	—	—	—	—	0.000	—	—	0.419	0.180	0.012	0.496	0.320	0.371	0.370	0.041	0.151	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012061	1.000	1.000	Hsc_gene_6489.t1	Hsc_gene_6489.t1	—	Q17551.1 E3 ubiquitin-protein ligase rpm-1 [Caenorhabditis elegans]	KAI1717659.1 PHR domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008270	GO:0008150_0.904\|GO:0005575_0.882\|GO:0110165_0.870\|GO:0009987_0.839\|GO:0065007_0.817\|GO:0050789_0.800\|GO:0005622_0.779\|GO:0003674_0.767\|GO:0032501_0.694\|GO:0050896_0.691\|GO:0016020_0.666\|GO:0050794_0.666\|GO:0032502_0.654\|GO:0048856_0.654\|GO:0008152_0.652\|GO:0007275_0.626\|GO:0048731_0.612\|GO:0019222_0.610\|GO:0005488_0.589\|GO:0016043_0.589\|GO:0071840_0.589\|GO:0051716_0.572\|GO:0007399_0.548\|GO:0071944_0.543\|GO:0048518_0.539\|GO:0005515_0.538\|GO:0030154_0.526\|GO:0048869_0.526\|GO:0003824_0.523\|GO:0043170_0.516\|GO:0005886_0.513\|GO:0044237_0.513\|GO:0048468_0.511\|GO:0009058_0.505	IPR000315+3730-3778+\|IPR000408+953-1004+\|IPR001841+3940-3990_3940-3991+\|IPR004939+3232-3423_3253-3416+\|IPR009091+486-782_536-1022_900-1091+\|IPR011044+389-606+\|IPR012983+1303-1466_1845-2004+\|IPR013083+3926-4001+\|IPR017896+778-812+\|IPR038648+1295-1468_1842-2013+	SM00184+3940-3990+\|SM01197+3936-3999+\|SM01337+3253-3416+	PF08005+1303-1466_1845-2004+PHR_domain\|PF13540+936-965+Regulator_of_chromosome_condensation_(RCC1)_repeat	G3DSA:3.30.40.10:FF:000078+3924-3999+E3_ubiquitin-protein_ligase_MYCBP2_isoform_X1	PTHR45943+2849-4203+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	844-933;1753-1803;2127-2172;2980-3023	5.000	1-843;934-1752;1804-2126;2173-2979;3024-4203	5o6c_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.739	461679.940	7.092	41.000	24.958	9.779	46.681	53.319	13.681	11.278	52.344

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	1718.179	5632.779	4438.179	2294.170	790.782	724.663	676.968	1047.775	313.732	1429.739	951.450

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.573	-1.433	-0.844	-1.569	—	—	0.428	-0.488	—	—	—	—	—

No JSON data available for plots.

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