Hg_chrom8_TN10mRNA_15779
Organism: Heterodera glycines Gene Locus: chr8:5876350-5878701 Feature type: polypeptideProtein Sequence
Length: 424
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 0.878 | 0.6 | 0.651 | 0.314 | 0.907 | 0.533 | 1.297 | 1.415 | 1.944 | 0.25 | 2.775 | 2.031 | 0.816 | 1.348 | 1.348 | 0.735 | 1.215 | 1.27 | 0.763 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14910
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.094
|
0.158
|
0.011
|
0.122
|
0.253
|
0.272
|
0.109
|
0.012
|
0.877
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012062
|
1.000
|
1.000
|
Hsc_gene_6488.t1
|
Hsc_gene_6488.t1
|
— |
Q09502.2 Neuropeptide receptor 18 [Caenorhabditis elegans]
|
KAH7727871.1 Protein NPR-27 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.929|GO:0009987_0.887|GO:0005575_0.850|GO:0110165_0.845|GO:0065007_0.815|GO:0050789_0.806|GO:0003674_0.791|GO:0050794_0.780|GO:0050896_0.776|GO:0023052_0.763|GO:0007154_0.760|GO:0051716_0.751|GO:0016020_0.736|GO:0007165_0.719|GO:0007186_0.701|GO:0005886_0.682|GO:0071944_0.682|GO:0060089_0.621|GO:0038023_0.617|GO:0004888_0.608|GO:0005488_0.568|GO:0004930_0.530
|
IPR000276+87-111_127-375_128-149_172-194_178-194_269-292_309-333_357-383+|IPR017452+102-375+
|
— |
PF00001+127-375+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24229+84-389+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-424
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
47995.800
|
9.803
|
18.500
|
16.038
|
14.151
|
37.264
|
62.736
|
10.849
|
5.189
|
46.698
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightyellow
|
640.265
|
67.842
|
179.267
|
78.636
|
110.802
|
276.013
|
647.406
|
123.192
|
6.876
|
2239.817
|
1282.842
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.170
|
— |
-1.079
|
0.464
|
1.331
|
1.240
|
-1.271
|
2.537
|
-8.459
|
— |
-4.067
|
— | — |
No JSON data available for plots.