Hg_chrom8_TN10mRNA_15783
Organism: Heterodera glycines Gene Locus: chr8:5888722-5890236 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.069 | 0.869 | 0.731 | 0.595 | 1.485 | 0.589 | 0.855 | 0.862 | 1.533 | 1.126 | 0.784 | 1.69 | 1.277 | 1.326 | 1.29 | 0.903 | 0.66 | 1.132 | 0.663 | 0.423 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14914
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.379
|
0.259
|
0.079
|
0.729
|
0.100
|
0.154
|
0.091
|
0.030
|
0.123
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004773
|
1.000
|
2.000
|
Hsc_gene_24022.t1;Hsc_gene_24022.t2
|
Hsc_gene_24022.t1;Hsc_gene_24022.t2;Hsc_gene_6484.t1
|
— |
Q91Z53.1 Glyoxylate reductase/hydroxypyruvate reductase [Mus musculus]
|
KAI6174917.1 Glyoxylate reductase/hydroxypyruvate reductase [Aphelenchoides bicaudatus]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016616|GO:0051287
|
GO:0008150_0.801|GO:0005575_0.762|GO:0110165_0.752|GO:0009987_0.702|GO:0003674_0.678|GO:0005622_0.612|GO:0008152_0.604|GO:0044237_0.578|GO:0016020_0.571|GO:0005737_0.528|GO:0043226_0.510
|
IPR006139+57-343+|IPR006140+134-312+|IPR029752+175-203+|IPR036291+128-313+|IPR050223+25-342+
|
— |
PF00389+57-343+D-isomer_specific_2-hydroxyacid_dehydrogenase,_catalytic_domain|PF02826+134-312+D-isomer_specific_2-hydroxyacid_dehydrogenase,_NAD_binding_domain
|
G3DSA:3.40.50.720:FF:000026+124-311+Glyoxylate/hydroxypyruvate_reductase_B
|
PTHR10996+25-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
347-348
|
1.000
|
1-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
38304.150
|
6.002
|
-2.000
|
26.149
|
8.621
|
42.529
|
57.471
|
13.218
|
12.931
|
50.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
846.492
|
3062.908
|
726.708
|
484.360
|
458.417
|
489.626
|
596.881
|
1446.222
|
415.283
|
667.518
|
559.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.306
|
-2.798
|
-0.476
|
— | — |
0.296
|
1.471
|
-1.141
|
— | — | — | — | — |
No JSON data available for plots.